Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04285 ATGATGTTGGGCAAGAGCTTCAAACAAATTCCACACCATCACCACCACTACCATGGAAGGAAAGTGGTCACGAAAGATATACCAAAAGGGTGCTTGGCAATCAAAGTGGGTCAAGGCGAAGAGAAACAGAGAATTACAGTACCCGTGAATTACCTCAACCACCCACTGTTTGCTCAGCTGCTGAAGGAGGCAGAGGAAGAGTTTGGTTTTGCTCAGCAAGGAACCATAACTATCCCTTGTCAAGTGGCAGAGTTTAAGTATGTTCAACACTTGATTGATAGTGAGAGGTCCCTTCAACACCATCAACACCTAGTTGGCTGCTTCAGGGCTTGA 333 0.4595 MMLGKSFKQIPHHHHHYHGRKVVTKDIPKGCLAIKVGQGEEKQRITVPVNYLNHPLFAQLLKEAEEEFGFAQQGTITIPCQVAEFKYVQHLIDSERSLQHHQHLVGCFRA* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04285 110 Pfam Auxin responsive protein 21 91 IPR003676 GO:0009733
Rops8g04285 110 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04285 Rops-Chr8 85714669 85715001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04285 26 88 Calmodulin-binding Proteins AT5G20810 55.556 1.59e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04285 K14488 - gmx:100500512 155.606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04285 8 85714669 85715001 Rops4g01675 4 40470050 40470761 PCT