Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04284 ATGTTAGATCATATGGAATATTCTCATTCATCAGAAGCCACAGAGGTAGAAATTTATAGCAGCAAAAATCTACCAGAGACCATGAGAAAGAAGAGGAGCAAAAACAAAATAAGGTTCAGTGATAAACAAATCAAATCATTGGAATCTATGTTTGAGACAGAATCAAGGCTGGAACCCATAAAGAAATTGCAGTTGGCAAGAGAGCTTGGGTTGCAGCCACGACAGGTTGCTATTTGGTTTCAGAACAGGAGAGCTCGATGGAAGTCAAAGCAGCTCGAGAGAGACTACAAAATACTTCGAGCCAATTATAACAATTTGGCTTCACGTTTTGATGCTCTCAAGAAGGAACAGCAGGCATTGCTTATACAGCTGCAGAAGCTGAATGATCTAAAGCAAAAGCCACTAGAGCAGACTCAGAGTTGTACACAAAACAAAGCAGCAAACAGCATGGACAATAAATCAGAAAATGGAGACACCATCAAAAGTGAACCAGAGGTAAAGCCTAGCCCATCAACAGAAAAATCAGAACATATACGTGGTGTTCTCTCGGACGGTGACAGCAGCATAAGGGCAGAAGCAGGATGCTTTTGTCTGGAAGATGAACCTGGAATTCTGAACTTTGTTGAGCATGGTGGTGGTTCTTTGACATCACCGGAAAATTGGGGTATGTTTGATTCCGGTAATCTCTTAGGCCAATCAACCAGTGATTATCAATTGTGGGATTTCTGA 729 0.4143 MLDHMEYSHSSEATEVEIYSSKNLPETMRKKRSKNKIRFSDKQIKSLESMFETESRLEPIKKLQLARELGLQPRQVAIWFQNRRARWKSKQLERDYKILRANYNNLASRFDALKKEQQALLIQLQKLNDLKQKPLEQTQSCTQNKAANSMDNKSENGDTIKSEPEVKPSPSTEKSEHIRGVLSDGDSSIRAEAGCFCLEDEPGILNFVEHGGGSLTSPENWGMFDSGNLLGQSTSDYQLWDF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04284 242 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Rops8g04284 242 CDD homeodomain 34 91 IPR001356 GO:0003677
Rops8g04284 242 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Rops8g04284 242 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Rops8g04284 242 Gene3D - 25 97 - -
Rops8g04284 242 MobiDBLite consensus disorder prediction 135 155 - -
Rops8g04284 242 Coils Coil 82 133 - -
Rops8g04284 242 FunFam Homeobox-leucine zipper protein ATHB-7 18 90 - -
Rops8g04284 242 SMART HOX_1 32 94 IPR001356 GO:0003677
Rops8g04284 242 SUPERFAMILY Homeodomain-like 16 92 IPR009057 -
Rops8g04284 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 170 IPR045224 GO:0003700
Rops8g04284 242 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Rops8g04284 242 MobiDBLite consensus disorder prediction 156 183 - -
Rops8g04284 242 Pfam Homeobox associated leucine zipper 90 132 IPR003106 GO:0006355|GO:0043565
Rops8g04284 242 Pfam Homeodomain 34 88 IPR001356 GO:0003677
Rops8g04284 242 MobiDBLite consensus disorder prediction 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04284 Rops-Chr8 85685105 85686593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04284 38 242 Homeobox Transcription Factor Family AT3G61890 51.185 2.06e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops8g04284 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04284 K09338 - gmx:100797862 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04284 8 85685105 85686593 Rops4g01673 4 40357794 40359324 PCT