Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04283 ATGGCCTCACTCTGGTTCACCATGACTCTCTTTTACTGGTCTCACCCAGGAGGTCATGCTTGGGGCAAGTACTACTCCTACTCCTACTCCTCCACAAAGAGAAAAACAACCTCATCACTTCATGTCTTAGACCATAACAAATCAAAACCAAAAGTGATTCCTGGTCCCAAAGGATGGCCTTTAATTGGAAGCATGGACCTCATGACATCTCTTGCCCACCACCGTATTGCAAACGCATGCGGAGGCAAGAGACTCATGGCTTTCAGCTTGGGTGACACACGTGCCATCGTCACGTGCCACCCTGATGTGGCCAAGGAGATTCTCAACAGCTCCGTCTTTGCCGATCGTCCTATCAAAGAATCCGCATATGCTTTGATGTTCAACAAAGCAATCGGGTTTGCTCCTTACGGTGTTTACTGGCGAACCCTCAGAAAAATCGCTTCTTCTCACCTGTTTTGTCCCTCACAAATCAAAGCCTCTCAGTTGCACCGCTCCAACATCGCCACCCAAATGGTTTACATGTTCAGAAACTCCCAACACAACTCCTTACGTGTTCGCCAAGTGCTACGAAAAGCGTCACTGATTAACATGATGTGTTCCGTTTTTGGACAACACTACAAGCTGCACGAGTCTAATGTTGAAACGGAAGAGCTTAGAGGATTAGTTGACGAAGGGTATGATTTATTGGGTACCCTTAATTGGGGTGACCACCTTCCTTGGCTCGCACATTTCGACCCTCAAAAAATCCGGTTCAGATGCTCCAACCTCGTGCCCAAAGTGAACCGGTTCGTCAGCACAATCATAGCCCAACACAGAGCTAATAAAACCCAAAAGAACTGGGATTTCGATTTCGTTGATGTCTTGCTCTCTCTCCACGGAATTGATAAATTGTCAGAATCTGACATGATCGCCGTACTTTGGGAAATGATATTTAGGGGGACAGACACAGTTGCGGTTTTGATCGAGTGGATACTAGCGAGGATGGTGCTACATCCTGATGTGCAATCCAAGGTTCAAGAGGAGCTAGATCGGGTAGTTGGGAAGTCACGCGCCGTCGCGGAGGATGACGTGGCGGCGATGACGTACCTGCCGGCGGTGGTTAAGGAAGTTCTGAGGCTTCACCCCCCTGGCCCACTTCTCTCTTGGGCCCGCTTGTCCATCAGTGATACGACCATTGATGGGTATCACGTGCCAGCTGGGACCACTGCTATGGTCAATATGTGGGCTATTTGCAGGGACCCACATGTGTGGAAGGACCCACTTGAATTTATGCCTGAGAGGTTCCTCACTACAGATGGAGAGTTTTCAATTCTCGGGTCGGATCTCAGGCTTGCTCCATTCGGGTCGGGTAGGAGGGCATGCCCTGGGAAGTCACTGGGTTTGGCCACGGTCACCTTTTGGGTGGCGACGCTTTTACACGAGTTTGAATGGTTCCCGTCTGATGAGAAAAACGGCGTTGATCTATCAGAGGTGTTGAGGCTCTCTTGTGAAATGGCTAACCCTCTCACTGCTAAAGTGCGCACTAGGCGTGGGTTAACTTTCATCTAA 1548 0.4948 MASLWFTMTLFYWSHPGGHAWGKYYSYSYSSTKRKTTSSLHVLDHNKSKPKVIPGPKGWPLIGSMDLMTSLAHHRIANACGGKRLMAFSLGDTRAIVTCHPDVAKEILNSSVFADRPIKESAYALMFNKAIGFAPYGVYWRTLRKIASSHLFCPSQIKASQLHRSNIATQMVYMFRNSQHNSLRVRQVLRKASLINMMCSVFGQHYKLHESNVETEELRGLVDEGYDLLGTLNWGDHLPWLAHFDPQKIRFRCSNLVPKVNRFVSTIIAQHRANKTQKNWDFDFVDVLLSLHGIDKLSESDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPDVQSKVQEELDRVVGKSRAVAEDDVAAMTYLPAVVKEVLRLHPPGPLLSWARLSISDTTIDGYHVPAGTTAMVNMWAICRDPHVWKDPLEFMPERFLTTDGEFSILGSDLRLAPFGSGRRACPGKSLGLATVTFWVATLLHEFEWFPSDEKNGVDLSEVLRLSCEMANPLTAKVRTRRGLTFI* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04283 515 CDD CYP78 81 502 - -
Rops8g04283 515 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Rops8g04283 515 SUPERFAMILY Cytochrome P450 53 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 Pfam Cytochrome P450 54 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PANTHER CYTOCHROME P450 78A7-RELATED 3 510 - -
Rops8g04283 515 FunFam Cytochrome P450 78A5 45 509 - -
Rops8g04283 515 Gene3D Cytochrome P450 40 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops8g04283 515 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04283 Rops-Chr8 85663822 85665851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04283 4 510 Cytochrome P450 AT2G46660 68.093 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04283 K20619 - gmx:100799906 784.252