Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04277 ATGATGGTTCTAGATGTATTGACTTCTGGTCCTACTTCAGAAGCTATTTCTCATATTATAGATACCATTGCTGAGTTTGCACTTTCTGCTAATGAAGTCCTTGTGAAAAAGGATAGTTTTAAGGAGCTAGCAGCTTACTTGGAAAGAATTGCACCCATCTTAAAAGCATTGAGGAAAGAAAAAGTAAGTGATTCTGAGACATTTAACCATGCCATTGAGGTTCTAGATCGTGAAATTAGAGATGCAAAACAACTGGCTCAAGAATGTAGCAAGAAGAGCAAGGTATATCTCCTAGTGAATTGCAGATCTGTTGTTAAGCGTTTAAAAAACAACACGAGTGAGATCAGCAGGACACTTGGTCTTCTTCCTTTGGCTGCATCAGGCCTTTCTACTGGAATAGTTGAAGAAATTGAAAAGCTATGTGACAACATGCAGGCAGCTGAGTTTAAGGCAGCCATAGCAGAAGAAGAGATTTTACAGAAAATTGAGTCAGGGATACAGGAAAAGAATGTTGATCGCTGCTATGCAAATGATTTGATGATTCTCATTGCAGAGGCTGTTGGGATTACTAATGAGAGGTCAACAATGAAAAAAGAACTTGAAGAGTTCAAGAGTGAAATTGAAAATGCCCGGCTAAGGAAGGACCTGGCTGAAGCCATACAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCCTCATCGCCAAGGGAAAAGGAACTCAAGTACTTTGCCAAACGTAACTCTTTGGGTAGTCAACCCTTGGATCCTTTACAGTCCTTTTATTGTCCCATTACCCGGGATGTTATGGTTGACCCTGTGGAAACTTCATCAGGGCAAACCTTTGAGAAAAGTGCAATAGAGAAGTGGTTTGCAGATGGAAACAAAATGTGTCCTCTGACTATGACTCCTTTGGACACTTCAATTTTGAGACCTAACAAAACTTTGAAACAATCAATAGAAGAATGGAAAGACAGAAATACAATGATTACCATTGCTTCAATGAGAGAAAAACTCCAGTCTGGAGATGACTATGAAGTCCTGTATTGTCTGCAAACTCTTCAAGATTTGTGTGAACAAAAGGACCAGCACAGGGAATGGGTGATACTGGAGAATTATATACCTGCTCTTATCCAAAATCTTGCTGCAAAAAACCGTGATGTAAGGAATAATGTCCTTGTCATCCTTTGCATGCTGGCGAAGGATAATGAAGATGCCAAGGAAAGAATTGCAAATGTTGATAATGCAATTGAGTCTATTGTACATTCTCTTGGACGCCGTTTAGGGGAAAGGAAGTTGGCAGTGGCATTACTGCTGGAATTATCCAAACATGATTTGTTAAGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGATGACAATCAAGCTGCCAGAGATGCAACAGAGCTACTGGAGAAGCTTTCATACTCTGATCAGAATGTTATACAGATGGCTAAGGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGATCAGATGATGTGAAGATGACTATGGTCAAAACGTTAGCAGAAATGGAGTTAACCGACCATAATAAGGAGACCTTGTTTGACAGTGGTATCCTGGCTCCTCTTCTTCACTTGGTCTTACATAATGATGTTCAAATGAAATCAATGGCCCTTGAAGCTCTACGGAATCTCTCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGGCAAGGTGCAGCACGCCTATTACTTGACATTCTTTTCCAGCACAGCCTTCCATCCTCAAGTCTGTGGGAACATGTAGCTCCCATAGTTATGCAACTTGCTGCATCAACCATCTCTCAAGATTCCCAGACACCAGTTTCATTATTAGAATCTGATGAGGATGTTTATAATCTTTTCTCTCTAATAAGTTACACAGTGCCTGATGTGCGACAATACACTGTCCAGACTTTTTATGCCTTGTGTCAGTCACCCTCAGCTTCATATATAAGGACCAAGCTAAGAGAGTGCCCAGCTGTTCAAGTATTGGTTAAATTGTTTGAGGATGAAAACCTAAATCTACGAGCAAATGCTGTAAAGCTGATTTCTTGCCTGGTTGACAGTTGTGATGAAGCCACCATACTGGAGAATGTGAATCAGAAGTGTATTGAGAGTTTACTCCGGATCCTGAAATCTTCATCTGATGAAGAGGAAATTGTTTCTGCTATGGGAATAATATGTTATCTGCCAGAAATTCCACAGATCACTCAGTGGCTTTTGGATGCTGGTGCACTGCCAATCATTTGTAATTACATCCAAGATGGGAAGGACAAAGATCTTCAGAAGTGTAAGTTGGTAGAGAATTCTGTAGGTGCCCTATGTCGTTTTACAGATCCATCAAACTTGGAATGGCAAAAGAGTGCAGCTGAAACTGGGATTATAACTGTTTTAGTGCAGTTACTTGAAAGTGGAACCACATCAGCAAAACAGCATGCCGCATTGTCTCTTGCACGATTTTCTAAAAGTTCACATGGGCTGACCAGGCCAATGCCCAAGCGTAAGGGATTTTGGTGCTTCTCAGCTGCAACAGAAAGTGGATGCTTAGTTCATGCTGGAATATGCACTGTCAAATCATCATTTTGCCTTTTGGAGGCTGATGCAGTGGGACCACTAGCAAAGACTCTTGGGGAATCTGATCCTGCAGTTTGTGAGGCTTCTTTAGATGCTCTACTAACTTTAATTGAAGGTGAAAGACTACAGAGTGGTAGTAAAGTGCTTGCAGATGAAAATGTGATACCATTAATAATAAAATATCTTGGTTCCCCTTCCCCTGGATTGCAGAGAAAGTCTGTAGATGCTTTGGAAAGGATTTTTCGGCAACTAGAGTTCAAACATAAATATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGCGGGGTAATGGTGATATAAGATCCATGGCAGCTAGAATATTGGCACATTTGAATGTGCTTCATGATCAATCTTCATATTTCTAA 3015 0.4056 MMVLDVLTSGPTSEAISHIIDTIAEFALSANEVLVKKDSFKELAAYLERIAPILKALRKEKVSDSETFNHAIEVLDREIRDAKQLAQECSKKSKVYLLVNCRSVVKRLKNNTSEISRTLGLLPLAASGLSTGIVEEIEKLCDNMQAAEFKAAIAEEEILQKIESGIQEKNVDRCYANDLMILIAEAVGITNERSTMKKELEEFKSEIENARLRKDLAEAIQMDQIIALLERADAASSPREKELKYFAKRNSLGSQPLDPLQSFYCPITRDVMVDPVETSSGQTFEKSAIEKWFADGNKMCPLTMTPLDTSILRPNKTLKQSIEEWKDRNTMITIASMREKLQSGDDYEVLYCLQTLQDLCEQKDQHREWVILENYIPALIQNLAAKNRDVRNNVLVILCMLAKDNEDAKERIANVDNAIESIVHSLGRRLGERKLAVALLLELSKHDLLREHIGKVQGCILLLVTMSSSDDNQAARDATELLEKLSYSDQNVIQMAKANYFKHLLQRLSTGSDDVKMTMVKTLAEMELTDHNKETLFDSGILAPLLHLVLHNDVQMKSMALEALRNLSSLKKNGLEMIRQGAARLLLDILFQHSLPSSSLWEHVAPIVMQLAASTISQDSQTPVSLLESDEDVYNLFSLISYTVPDVRQYTVQTFYALCQSPSASYIRTKLRECPAVQVLVKLFEDENLNLRANAVKLISCLVDSCDEATILENVNQKCIESLLRILKSSSDEEEIVSAMGIICYLPEIPQITQWLLDAGALPIICNYIQDGKDKDLQKCKLVENSVGALCRFTDPSNLEWQKSAAETGIITVLVQLLESGTTSAKQHAALSLARFSKSSHGLTRPMPKRKGFWCFSAATESGCLVHAGICTVKSSFCLLEADAVGPLAKTLGESDPAVCEASLDALLTLIEGERLQSGSKVLADENVIPLIIKYLGSPSPGLQRKSVDALERIFRQLEFKHKYGASAQMPLVDLTQRGNGDIRSMAARILAHLNVLHDQSSYF* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04277 1004 Coils Coil 193 220 - -
Rops8g04277 1004 Coils Coil 137 157 - -
Rops8g04277 1004 Gene3D - 630 996 IPR011989 -
Rops8g04277 1004 SUPERFAMILY ARM repeat 333 994 IPR016024 -
Rops8g04277 1004 Pfam Armadillo/beta-catenin-like repeat 529 569 IPR000225 GO:0005515
Rops8g04277 1004 CDD RING-Ubox_PUB 263 312 IPR045210 -
Rops8g04277 1004 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Rops8g04277 1004 Coils Coil 72 92 - -
Rops8g04277 1004 Gene3D - 12 126 IPR036537 GO:0007166
Rops8g04277 1004 SMART arm_5 749 795 IPR000225 GO:0005515
Rops8g04277 1004 SMART arm_5 363 403 IPR000225 GO:0005515
Rops8g04277 1004 SMART arm_5 916 956 IPR000225 GO:0005515
Rops8g04277 1004 SMART arm_5 529 569 IPR000225 GO:0005515
Rops8g04277 1004 SMART arm_5 706 745 IPR000225 GO:0005515
Rops8g04277 1004 SMART arm_5 405 445 IPR000225 GO:0005515
Rops8g04277 1004 SMART arm_5 664 704 IPR000225 GO:0005515
Rops8g04277 1004 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Rops8g04277 1004 SUPERFAMILY RING/U-box 249 331 - -
Rops8g04277 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1004 - -
Rops8g04277 1004 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Rops8g04277 1004 Gene3D - 337 629 IPR011989 -
Rops8g04277 1004 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Rops8g04277 1004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 336 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04277 Rops-Chr8 85564283 85571311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04277 261 1004 U-box Gene Family AT1G76390 28.390 4.67e-60 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04277 - - gmx:100799969 1459.12