Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04272 ATGGATTCTGGTGCTGTATTGGCATTGCCTATGAACAATGGATTCAGAACAAGAGAACCTCCAGATTTTGAGGAGGACTTTGTAGAGAAAGATCCTACCGGCCGGTACATTCGGTACAATGAAATCTTGGGCAAGGGTGCTTTCAAGACTGTTTATAGGGGCTTTGATGAAGTTGATGGAATAGAAGTAGCTTGGAACCAAGTCCAGATTGATGAACTCTTGAAGTCAGTAGATGATCTTGCAAAATTGTATTCTGAAGTTCATATATTGAAGTCTCTGAAACATGAAAATATCATAAAGTTCTTTAATTCCTGGATTGATGATAAGAAGAAAACTGTAAATATTATAACTGAGCTATTCACATCTGGAAATTTAAGGCAATACCGTAAGAAGCATAAATATGTTGACATGAAAGCCATAAAAGGTTGGGCCAGACAGATTCTTCAAGGCTTAGCATATCTTCACAGTCACAAGCCACCTATTATTCACAGAGACTTGAAATGCGACAACATCTTTGTCAATGGAAACCATGGTGAAGTCAAGATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTTATTGGTACTCCCGAGTTTATGGCTCCAGAACTATATGAAGAGGAATACAATGAACTTGTAGATGTCTATTCTTTTGGGATGTGCATGTTGGAGATGGTTACTTTTGAGTACCCATACAGTGAATGCAAAAATCCAGCCCAAATCTATAAGAAAGTTACCTCTGGCATTGAACCTGCATCCCTTAAAAGGGTGAGTGATCCTCAAATTAAGGAGTTTATCAAGAAATGTCTTGTTCCAGCATCTGAGAGATTGTCTGCAGAGGATCTTCTTAAAGACCCATTTCTGCAAGTTGAGAGTCCAAAGGATCCAATCCCTGATCCCTTACAGTTACCTAGTAAATCTCTAAAAGCTTTGGATCTGTCCAAGTCTGGTCATCTATCTATGGACGTAGATTATGACTCCAAACAGATCTCTGCGAGTAGCTGTGCTGAAAACAGCCAGAGAAATCAACATTGTCCAGTTCTTGAAGTTCAGAGGACATATAAGAACAACGAGTTTAGGTTGACAGGAACCAAAAATGGTGACAACTCAGTATCGTTGATCTTGCGTATTGCTGATTTAAGTGGTCAAGTAAGGAATATACATTTTCTCTTTTACCTTGAGACGGATACTGCAGTGGCCGTTGCCTCGGAGATGGTTGAAAATTTGGAGCTGGCAGATCATGATGTAGCCTTCATAGCCGAGCTTATTGATTACCTGATAATGAAACTTCTACCTGGGTGGAAGCCCTCATCTGATTATTCCTCAAGTGGAGGATTAAGTCTGTGTGGTGGCTCTGATTATTCCTTAATGCCTTACCCATGTGGTTCTGTCCTAACTAGTGTTAGCTCTGAATTGGTTTTTGATCAAGATAACTTTTCTGGGTTTAATACTACTCAAAGAGAAGGGTTTGTGACACCTAAGGTGAGCTGCATGTTTAACATTGCTGACATTGCTATTTTTGAGGGTGAGTATTGTTCTTCTCCTAGTTTGGCTAGCTTAGAAGATCAATATTCACAAGAATCTGCACCTTATGAGGTAGTTATTGAAGATGCTTGCATGAAAAATGACAACTGTCTTGATTCTGATGATGGGAGTTATAAAGGATTAAGTTGGTCCACCTTTGGGGATACATATTTTGGAGGCTGTAAATTGCAGACTACAGACTGCAGTGCTGGAGAAGGCATTGTGATGAATGAATTCTCAAATAACTTACACTCTATAACCCCAGCTTTTTCTGGAACTTCTAATGTAATGAGCGTAACAAGCAGCTGTTCCTCTTTGTCTTTAGCCGACAAAGACATTGACCTTGAACTGAAGTTTGAACTTGATGCAATTGAGTCTCAGTATCAGCATTGGTTTCAAGAACTTTCTAGAATGAAGATGGAGGCATTGGAAGCCACCAGAAGGAAATGGATAGCCAAGAAGAAACTTGCTGTTCATTGA 2022 0.3981 MDSGAVLALPMNNGFRTREPPDFEEDFVEKDPTGRYIRYNEILGKGAFKTVYRGFDEVDGIEVAWNQVQIDELLKSVDDLAKLYSEVHILKSLKHENIIKFFNSWIDDKKKTVNIITELFTSGNLRQYRKKHKYVDMKAIKGWARQILQGLAYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIYKKVTSGIEPASLKRVSDPQIKEFIKKCLVPASERLSAEDLLKDPFLQVESPKDPIPDPLQLPSKSLKALDLSKSGHLSMDVDYDSKQISASSCAENSQRNQHCPVLEVQRTYKNNEFRLTGTKNGDNSVSLILRIADLSGQVRNIHFLFYLETDTAVAVASEMVENLELADHDVAFIAELIDYLIMKLLPGWKPSSDYSSSGGLSLCGGSDYSLMPYPCGSVLTSVSSELVFDQDNFSGFNTTQREGFVTPKVSCMFNIADIAIFEGEYCSSPSLASLEDQYSQESAPYEVVIEDACMKNDNCLDSDDGSYKGLSWSTFGDTYFGGCKLQTTDCSAGEGIVMNEFSNNLHSITPAFSGTSNVMSVTSSCSSLSLADKDIDLELKFELDAIESQYQHWFQELSRMKMEALEATRRKWIAKKKLAVH* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04272 673 FunFam Probable serine/threonine-protein kinase WNK1 22 118 - -
Rops8g04272 673 Gene3D Phosphorylase Kinase; domain 1 22 118 - -
Rops8g04272 673 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 433 IPR024678 GO:0004674|GO:0005524
Rops8g04272 673 ProSiteProfiles Protein kinase domain profile. 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04272 673 CDD STKc_WNK 35 294 - -
Rops8g04272 673 SUPERFAMILY Protein kinase-like (PK-like) 39 341 IPR011009 -
Rops8g04272 673 Gene3D - 375 442 - -
Rops8g04272 673 SMART serkin_6 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04272 673 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 447 - -
Rops8g04272 673 Pfam Protein kinase domain 40 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04272 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Rops8g04272 673 FunFam probable serine/threonine-protein kinase WNK9 120 299 - -
Rops8g04272 673 Gene3D Transferase(Phosphotransferase) domain 1 120 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04272 Rops-Chr8 85532590 85536708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04272 542 673 MAP Kinase Kinase Kinase AT5G41990 32.090 5.66e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Rops8g04272 Pkinase 5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04272 K08867 - gmx:100272197 904.049