Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04267 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGATTGCACAGAGGTCCATGGACTCCTCGGGAAGATGCATTGCTCACCAAGTATATTCAAGCTCATGGAGAAGGACAGTGGAGATCACTACCAAAAAGAGCTGGGCTTCTCAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGGAACATAACTCCCGAAGAAGATGACCTTATAATAAGAATGCATTCACTTCTAGGAAATAGATGGTCCCTCATAGCAGGAAGATTACCGGGACGAACAGATAATGAGATAAAGAACTACTGGAACACCCATCTCAGTAAAAAGCTAAGAAACCAAGGAACAGATCCAAACACACACAAGAAGTTAACAACAGATCCAGCGCAAGAACCAGGGAAGAAGAAGGACAAGAAGAAGAAGAATAAGCAGAAGAACGACAAAGGTGGGAAAGTAGAGTCAGAGAAGACCTTAGTTTATCTACCAAAACCCATAAGGGTAACAGCTTTATCATCCATACCCAGAACGAATAGCACCCTCACCATGGATTCCAATTCATCAACAAGCCAAGAGAAAGAAGTAAAAGAGGTCAACGTGGTTTGGGAGGTAGGTGAGGATGATGGGTTTGGATTCTTTGGTGAGGAAGAGTATGGCTTAGTCAACAATTGTGACGTGGAATGCCAATCTGGGTTTCCCACGGATCCTGGTACACTTGAGAAACTCTATGAAGAGTACTTGCAGCTCTTGAAGGCTGAAGAGAATTCCAACCCAGTTGAATTAGATTCTTTTGCTGAATCTTTGTTGGCGTAA 825 0.4303 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPNTHKKLTTDPAQEPGKKKDKKKKNKQKNDKGGKVESEKTLVYLPKPIRVTALSSIPRTNSTLTMDSNSSTSQEKEVKEVNVVWEVGEDDGFGFFGEEEYGLVNNCDVECQSGFPTDPGTLEKLYEEYLQLLKAEENSNPVELDSFAESLLA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04267 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g04267 274 FunFam transcription repressor MYB5-like 71 160 - -
Rops8g04267 274 FunFam Myb transcription factor 11 67 - -
Rops8g04267 274 Gene3D - 14 66 - -
Rops8g04267 274 CDD SANT 16 61 IPR001005 -
Rops8g04267 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g04267 274 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops8g04267 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g04267 274 SMART sant 13 63 IPR001005 -
Rops8g04267 274 SMART sant 66 114 IPR001005 -
Rops8g04267 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g04267 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops8g04267 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 197 - -
Rops8g04267 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops8g04267 274 MobiDBLite consensus disorder prediction 115 160 - -
Rops8g04267 274 CDD SANT 71 112 IPR001005 -
Rops8g04267 274 Gene3D - 71 161 - -
Rops8g04267 274 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04267 Rops-Chr8 85384666 85386188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04267 4 137 MYB Transcription Factor Family AT3G13540 70.896 6.61e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g04267 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04267 K09422 - gmx:778044 377.481