Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04266 ATGAATTCCCCTGCTGAGGCAAAGGCGAGGACCCATCAACCCTGCGCAGCATGCAGGATGCTACGCCGGAGATGTGATAGTAATTGCCTACTTGCTCCATATTTCCCAACTGATGAGGTTGAGAAATTTATTGGAGTGCATAATGTGTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTGGAGGAGACAAATAGAGAAGATGCTGTTAAAGCCATAGTCTACGAGGCCACAGCAAGGCTTAGAGACCCTGTTTATGGCAGTGCTGGAACTATTTTCCAGCTGCAAAAGATGATTAGTGAACTGAAAGAGCACCTGGAATCGATAAAAATTCGGGTATCAGAGCTGCGTGAACAAAAAGATCAGTTGTTGAGCATTCACAACAACAACGCTCAAGGCCATCTTGATCCTCTGTTTTCTATCAATGACCCTATCTTTGATGATTACAACAATTTGTCAGGAGACTTTTATCATCCCATGGCCTCTGATCCACTTGAATTTCCTGTGGAAGGTGACTGGATTCATGGCAATATTAATAATATGTTAACACCTATTAATTAG 564 0.4255 MNSPAEAKARTHQPCAACRMLRRRCDSNCLLAPYFPTDEVEKFIGVHNVFGASNVIKMIQMVEETNREDAVKAIVYEATARLRDPVYGSAGTIFQLQKMISELKEHLESIKIRVSELREQKDQLLSIHNNNAQGHLDPLFSINDPIFDDYNNLSGDFYHPMASDPLEFPVEGDWIHGNINNMLTPIN* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04266 187 Coils Coil 93 127 - -
Rops8g04266 187 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Rops8g04266 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 120 - -
Rops8g04266 187 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04266 Rops-Chr8 85353277 85354429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04266 14 137 AS2 family AT2G28500 49.194 9.53e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g04266 LOB 4.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04266 - - ccaj:109796546 260.381