Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04262 ATGGCGAGTTCTCAGGCTGGAACAGGTGATAATGTGTATACGCATCTATGGAAGTTGTGTGCAGGGGCTTTGGTGGATGTTCCTCGTGATGAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACAAATCAAGAACTGAACGACGAATTGAACCAGCAAATTCCTCATTTCAATCTCCCCTCCAAGATTCTCTGCAGTATTGTGCACATTCAGTTGTTGGCGGAACATGAAACTGATGAAGTTTATGCTCGAATCACTTTGCTTCCAGAATCAAATCAAAATGAGCCGACAATTCCTGACCCAAGTCCACCCGAGACCCAAAAAAAAGAGTTTTACTCTTTTAGCAAGATATTAACTGCTTCTGATACTAGCACACATGGAGGATTTTCAGTTCCTCGGAAGCATGCTATCGAGTGCTTACCTCCATTGGACATGACCCAAGAAACCCCAACCCAGGAATTGGTAGTCAAGGATCTTCATGGGTACGAGTGGAAGTTTAAGCATATATACAGAGGTCATCCAAAGAGGCACTTGCTTACAACTGGCTGGAGTACTTTTGTGACATCCAAAAGATTGGTTGCTGGAGACGTCTTTGTGTTTGTAAGGGGAGAGAATGACGAACTGAGAATCGGTATTAGGCGTCTCGCTCGGCATCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCACATGCTCTTTTAACTTGTACCATGTTTGCGGTTTATTACAAACCTAGCTTGCCTTTCGATACATTCAGGACCAGCCAGTTTATTGTTGGTCTGAACAAATATCTAGAGGCAGTCAACCATGAGTTTTCAGTTGGCATGCGGTTCAATACGAGATTTGAGGTGGAGGACTCACCCGAGAAAAGTTTTTCTGGTACTATTGTTGGAGTTGGGGACATATCTCCAGAATGGTCAAACTCTCAGTGGCGTTCATTGAAGGTTCAATGGGATGAACCGACAACAATTTCCAGGCCAGAGAGGGTTTCCCCATGGGAGATAGAACCTTTCGTAGCTACTACTGCTTCAAATGTCAGTCAACCAGTGGTGAAAGGCAAAAGGTCCAGGCCTGCTGAGGTTTCTTCTTCTGAAATTGCTCTCAATTCTCCTGCTTCAGCTTTCTGGTTTCAAGGACCTTCTTTATCCCATGAACCTACACAATTAGGTGGTGCTTCAGAAGTCCAAAACATAGGAAACCCAGTTGTATGGTCTTTGAGGCAGAAAGAAATTGATGGCAATAATATGAATGCTAACTGGCCTTATTCCCCACATTTCAATGTCTCTTCAAACTTTATTCCTGAACCCAAGAACAATAAAGATGTAGCAGTTGGATTATCTCTCTCTGGTTATCCTCCTGTTTCAGCTAGGCCAAATGATGGTTTGGCACATGATCAAGTGGAAAGTGGTAAAAAAACTGAGAATCCTACGGGTTGCTGGGTATTTGGAGTTAATTTGACTAACAACTTTACTAAGGAGAAGGAATTAGGATGTGCAGCTATTATTCCTAGTGGTCCCAAAGATTCCATTCATGTTGCATCATGTGAAACTGAGGGTGGTCAGAATCTCAATTATTCACTATCCAATAAGGAGCAGAAGCAAATTATTTCTGATGCAGCACCCAATGAGAGGCAGAGCAAGCAGGTCTTTGTACCAGCCATGAGGACTCGGACTAAGGTGCAAATGCAAGGGGTTGCTGTTGGTCGTGCTGTTGACTTGGCCATGTTAAAAGATTACAATGACCTCATAGATGAGCTTGAGAAAATGTTTGATATTAAAGGAGAACTTCGTTTGCAAAACAAATGGACCATTACTTTTACTGATGATGAAAATGAAGTGATGCTTGTTGGTGATCATTCATGGCCGGAGTTCTGTACCATGGTGAAGAGGATTGTCATTTATTCAAGTGAGGATGTGAAGAATATGAAATGCAAGCGTCCAGCTTCTTCGTCAGAAGTCGAAGAGATTTTGTTGAGCCAAGGTTCACAGAAAAGAAATTAG 2055 0.4287 MASSQAGTGDNVYTHLWKLCAGALVDVPRDEERVFYFPQGHMEQLQASTNQELNDELNQQIPHFNLPSKILCSIVHIQLLAEHETDEVYARITLLPESNQNEPTIPDPSPPETQKKEFYSFSKILTASDTSTHGGFSVPRKHAIECLPPLDMTQETPTQELVVKDLHGYEWKFKHIYRGHPKRHLLTTGWSTFVTSKRLVAGDVFVFVRGENDELRIGIRRLARHQSPMPSSVISSQSMHLGVLATASHALLTCTMFAVYYKPSLPFDTFRTSQFIVGLNKYLEAVNHEFSVGMRFNTRFEVEDSPEKSFSGTIVGVGDISPEWSNSQWRSLKVQWDEPTTISRPERVSPWEIEPFVATTASNVSQPVVKGKRSRPAEVSSSEIALNSPASAFWFQGPSLSHEPTQLGGASEVQNIGNPVVWSLRQKEIDGNNMNANWPYSPHFNVSSNFIPEPKNNKDVAVGLSLSGYPPVSARPNDGLAHDQVESGKKTENPTGCWVFGVNLTNNFTKEKELGCAAIIPSGPKDSIHVASCETEGGQNLNYSLSNKEQKQIISDAAPNERQSKQVFVPAMRTRTKVQMQGVAVGRAVDLAMLKDYNDLIDELEKMFDIKGELRLQNKWTITFTDDENEVMLVGDHSWPEFCTMVKRIVIYSSEDVKNMKCKRPASSSEVEEILLSQGSQKRN* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04262 684 Pfam Auxin response factor 247 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops8g04262 684 SMART B3_2 121 223 IPR003340 GO:0003677
Rops8g04262 684 Gene3D - 569 661 - -
Rops8g04262 684 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Rops8g04262 684 FunFam Auxin response factor 289 360 - -
Rops8g04262 684 SUPERFAMILY DNA-binding pseudobarrel domain 112 250 IPR015300 -
Rops8g04262 684 CDD B3_DNA 120 221 IPR003340 GO:0003677
Rops8g04262 684 SUPERFAMILY CAD & PB1 domains 573 649 - -
Rops8g04262 684 Pfam AUX/IAA family 558 609 IPR033389 -
Rops8g04262 684 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Rops8g04262 684 FunFam Auxin response factor 119 223 - -
Rops8g04262 684 Gene3D - 289 362 - -
Rops8g04262 684 ProSiteProfiles PB1 domain profile. 573 656 IPR000270 GO:0005515
Rops8g04262 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops8g04262 684 Gene3D - 119 222 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04262 Rops-Chr8 85305592 85310080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04262 9 660 B3 DNA Binding Superfamily AT4G23980 53.963 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops8g04262 B3 1.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04262 K14486 - gmx:100820503 940.643