Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04260 ATGGACCATCAACCACCACCGTGCCCCGAAGATGACGTAACCGTCGCCGCAGACAGCCGGAGAGGTGGCACGCGCCATCCTGTGTACCGTGGCGTCCGGAAACGACGGTGGGGCAGATGGGTATCCGAAATTCGAGAGCCACGCAAGAAATCACGCATATGGCTGGGGTCTTTTCCGGTGCCGGAGATGGCGGCGAAAGCATACGACGTCGCAGCGTATTGCCTTAAAGGAAGAAAAGCGCAGCTCAACTTTCCCGACGAGGTGGAGCACCTGCCGCTTCCGTCGACCTGCACGGCCAGAGACATTCAGGCTGCGGCGGCCAAGGCGGCGCGTATGATGAAAGCTTCGCCTATTGAGAAAAGTGGCATTGCTTCCGACGGAGATAGAGGTGGCGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTGATGGACAGTGAGTGTTGCTGGAGTTCTCCAAGTGGGTCATCGTGGAATTCCTCCGGTGACATCACGGCGTGGCCGGAGGTTGAGCTTTTGCCGCAGCAACCCTTCATGGCGTGTTTATAA 549 0.5774 MDHQPPPCPEDDVTVAADSRRGGTRHPVYRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDEVEHLPLPSTCTARDIQAAAAKAARMMKASPIEKSGIASDGDRGGDDFWGEIELPELMDSECCWSSPSGSSWNSSGDITAWPEVELLPQQPFMACL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04260 182 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Rops8g04260 182 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Rops8g04260 182 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g04260 182 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Rops8g04260 182 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Rops8g04260 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 122 - -
Rops8g04260 182 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Rops8g04260 182 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Rops8g04260 182 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Rops8g04260 182 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Rops8g04260 182 FunFam Ethylene-responsive transcription factor 2 27 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04260 Rops-Chr8 85245588 85246166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04260 24 182 AP2-EREBP Transcription Factor Family AT1G01250 66.667 2.40e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g04260 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04260 K09286 - gmx:100819971 264.618