Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04258 ATGCAGGGTGAGGTGGGGTCAGGGCGCGTGTTATGGAATGATGAAGAGAAGGCCATGGTTTCAGCTGTTCTGGGTTCTAGAGCTTACGAGTTTTTAATCACAAACTGTGTGTCTAATGAGAGTGTGTTAATGGCTGTTGGGAGTGACGATGGCCTTCAGAACAAGCTTTCGGATCTCGTGGACCGTCCCAATGTTTCCAATTTCAGTTGGAACTATGCGATTTTCTGGCAACTTTCGCAGTCAAAATCTGGGGACTGGGTTCTGGGTTGGGGAGATGGTTGTTGCAGGGAACCGAACGAGGAAGAAGAACGTGTAATTAGAGGAATCCTGAGCCTTCGAATGGAGGATGAGATGCAGCAGAGTATGAGGAAGAAGGTGTTGGAGAAGCTGCACACCACGTTTGGGGGTTCAGATGAGGACAATTACGCTTTTGGCCTTGACCGTGTGACTGACACAGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTCCCTCGTGGGCATGGTGGACCTGGTAAGTGCTTTGCTTCAGGGAAGCATTTATGGTTGAAATCTGTCTCTGATTACTGCATGCGTTCTTTCTTGGCTAAATCAGCTGGAATTCAAACCGTTGTTTTAGTCCCTACTAATTTGGGAGTGGTGGAGTTGGGTTCTGTTAGAATGCTACCCGAGAGTTTTGAATTGTTGCAGGCCATAAAATCTGTGTTTTCCACCCAATCATCGTACCCTGGTGTGAATGAGAGTGCCCTTTTTCCTATTGGGGAAAATAAGGTAGATGGGGTTCCTAAGGTATTTGCGAACACGGGTCCTACACATTTCAGGGAGAAGCTTGCTATTAGAAAAATGGAAGATAATAGGCCATGGGGAGGCCACCCCAATGGGAATAGCATTAACTTTCCTAATGCTAGAAATGGTTTTCATGGTTCGAGTTCTAGTTGGGGACCTAATCAAGGTGTGAGGCAGCCTGGCCCTCCTGAAATTTTTGCTCCCAGGCCCTCCACAAGCAATGTTCAGGAGGTAGCTAATGGGGTGAGACAGGATTTCAGGCGCAACAACAATTATCAGCCTGAAAGGCAGGTGCAAATGCAAATTGACTTTTCAGGCACCACTTCAAATCCTTCTGTGAGACCAGTCACTGCTGAATCTGAACTTTCTGATGTTGAGGCCTCTTGCAAAGAGGAGCAACCGAGTACTACTGATGATAGGAGACCAAGGAAGCGTGGCAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTCAATCACGTGGAAGCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGCGATTCTATGCATTAAGAGCTGTAGTGCCCAATATATCCAAGATGGACAAGGCATCATTACTGGGTGATGCCATTGCTTACATAAATGAGCTTCAAGCAAAACTCAAGATCATGGAGTCTGAGAGGGAGAGATTCGGAAGCACTTCAAGGGATGGATCAGTGTTGGAGGCCAACTCAAGATCAGAATCTCATCGGAATAGAGCTCCTGATGTTGATATTCAAGCTGCCCAAGATGAGGTCATTGTAAGGGTGAGCTGCCCTCTTGATACTCACCCTGTCTCAAAAGTAATACAAACATTCGAAGAGGCACAAATCAGTGTTGTAGAGTCAAAACTCGCTGCTGCAAATGATACTATCTTCCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTTACAAAGGACAAGTTGATTGCAGCATTTTCTCGAGAGTCCAACACATAA 1749 0.462 MQGEVGSGRVLWNDEEKAMVSAVLGSRAYEFLITNCVSNESVLMAVGSDDGLQNKLSDLVDRPNVSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEERVIRGILSLRMEDEMQQSMRKKVLEKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLKSVSDYCMRSFLAKSAGIQTVVLVPTNLGVVELGSVRMLPESFELLQAIKSVFSTQSSYPGVNESALFPIGENKVDGVPKVFANTGPTHFREKLAIRKMEDNRPWGGHPNGNSINFPNARNGFHGSSSSWGPNQGVRQPGPPEIFAPRPSTSNVQEVANGVRQDFRRNNNYQPERQVQMQIDFSGTTSNPSVRPVTAESELSDVEASCKEEQPSTTDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERERFGSTSRDGSVLEANSRSESHRNRAPDVDIQAAQDEVIVRVSCPLDTHPVSKVIQTFEEAQISVVESKLAAANDTIFHTFVIKSQGSEQLTKDKLIAAFSRESNT* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04258 582 MobiDBLite consensus disorder prediction 331 379 - -
Rops8g04258 582 Gene3D - 409 481 IPR036638 GO:0046983
Rops8g04258 582 MobiDBLite consensus disorder prediction 291 318 - -
Rops8g04258 582 MobiDBLite consensus disorder prediction 477 501 - -
Rops8g04258 582 Coils Coil 462 482 - -
Rops8g04258 582 CDD bHLH_AtAIB_like 413 478 - -
Rops8g04258 582 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 236 IPR025610 -
Rops8g04258 582 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 419 479 IPR036638 GO:0046983
Rops8g04258 582 MobiDBLite consensus disorder prediction 285 427 - -
Rops8g04258 582 FunFam Transcription factor bHLH13 409 483 - -
Rops8g04258 582 Pfam Helix-loop-helix DNA-binding domain 420 466 IPR011598 GO:0046983
Rops8g04258 582 MobiDBLite consensus disorder prediction 386 427 - -
Rops8g04258 582 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 416 465 IPR011598 GO:0046983
Rops8g04258 582 SMART finulus 422 471 IPR011598 GO:0046983
Rops8g04258 582 PANTHER MYC 40 575 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04258 Rops-Chr8 85193413 85195161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04258 8 579 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.897 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g04258 bHLH-MYC_N 2.8e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04258 - - gmx:100801502 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04258 8 85193413 85195161 Rops4g01640 4 39814125 39816799 PCT