Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04256 ATGGAAGCCGAAACTCGACGGAAAATCGAGGACATGGTGTTGGATATACTGAAAAAATCCAATATTGAAGAGACCACCGAGTTCGACATCCGAGTCGCTGCCTCGGAGCGACTCGGCATCGACCTTTCCGACCCTGAGAGCAAGTACTTCGTCAGAAATATCGTCGAGTCTTTTCTTCTCGCCGTCGCCGCCGAGGAGAAACCGCCGGAAGATTCCAGAGAGGTGGTGACCGCAGAGGAGAAGGTTCCGGAAGAGTCCAGAGAGTTCGTGAAACCTAAGAAGGAGGACTCAGACCGCGTTATTTGCCAGCTATCAAGCAGGAGGAATGTGGTGGTACGAGATTTCAGAGGGACAACATTGGTGTCAATCAGGGACTTCTATTGTAAAGATGGAAAACAGCTTCCTGGTCCTAAAGGGATAAATTTATCTGCTGAACAATGGTCAACCTTCAAGAAGAGTGTTCCCGCCATAGAGGAAGCTATCGCAAAGATGGAAGGAAGGATGAGGTCAGAGCTTAATGGTAAGCAAAATGGAGATGTGTCAAATGCAGTTGTTGATGCTGCTCCTCTCGAACTTGTCCCCATTGAGATTATCCGTTTTGATGGGAAGAAATACCAATTTTGGGCTCAACAGATGGAATTACTGTTGAAACAGTTAAAGATTGAATATGTGCTTACTGAACCATGCCCAAATGCTACATCAGAGGAAGAAGCAAGTGGTGAAGAAATTGCTGGAGCCAAAGCTGCTGAAAAGAGATGGGTGAATGATGATTTAATGTGTCATCACACCATTGTGAGCCATTTATCTGATCATCTTTTCAATCAGTATGCAAACAGGAAAATGAATGCTAAGGAGTTATGGGAAGAGTTAAAATTGGTTTATCAATACGAGGAATACGAAAGCAAGAGATCTCAGGTGAAAAAGTATATTGAATTTCAGATGGTTGATGAGAAAGCAATTGTTGATCAAATTCAAGAATTTAATAGCATTGCAGACTCCATTGTTGCTGCTGGAATGCCTGTTGACGAGAACTTTCATGTTAGTGCTATCATTTCAAAACTTCCACTGTCCTGGAAAAAGTTTAGCATCAAGTTAATGCGTGAGGAGTATCTACCTTTCTGGAAGTTAATGGAACGTATAAGGATAGAGGAAGAATCTCATAACAGAGTCAAACAAGTGGATGAACCTTCTTCTAGTGGTAATAGATTTCACCATCACGAACCTTCTTCTAATGGTAATAGATTTCACCATCACGAACCTCCTTCTAATGGTAATAGATTTCACTATGCCAATAAAGGTGGATACAGGGGGGCTGAGAATAGGCCTCCAGGTATGCATAGGAATAAATCAGAATTTAATGCCAAGATCATATCCTGTTATATTTGTGGCAGGAAGGGGCATCTTTCTAAATACTGCTGGAGAAGATATGACAAGCAAGCTAATGAAAGGAGAGAAGTGGAGGATATGCGTATGCGTACAGCAATTAATACGCTGGGGGTTGAGTAA 1506 0.4243 MEAETRRKIEDMVLDILKKSNIEETTEFDIRVAASERLGIDLSDPESKYFVRNIVESFLLAVAAEEKPPEDSREVVTAEEKVPEESREFVKPKKEDSDRVICQLSSRRNVVVRDFRGTTLVSIRDFYCKDGKQLPGPKGINLSAEQWSTFKKSVPAIEEAIAKMEGRMRSELNGKQNGDVSNAVVDAAPLELVPIEIIRFDGKKYQFWAQQMELLLKQLKIEYVLTEPCPNATSEEEASGEEIAGAKAAEKRWVNDDLMCHHTIVSHLSDHLFNQYANRKMNAKELWEELKLVYQYEEYESKRSQVKKYIEFQMVDEKAIVDQIQEFNSIADSIVAAGMPVDENFHVSAIISKLPLSWKKFSIKLMREEYLPFWKLMERIRIEEESHNRVKQVDEPSSSGNRFHHHEPSSNGNRFHHHEPPSNGNRFHYANKGGYRGAENRPPGMHRNKSEFNAKIISCYICGRKGHLSKYCWRRYDKQANERREVEDMRMRTAINTLGVE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04256 501 MobiDBLite consensus disorder prediction 387 422 - -
Rops8g04256 501 Pfam Transcriptional Coactivator p15 (PC4) 102 152 IPR003173 GO:0003677|GO:0006355
Rops8g04256 501 SUPERFAMILY ssDNA-binding transcriptional regulator domain 101 163 IPR009044 GO:0003677|GO:0006355
Rops8g04256 501 ProSiteProfiles Zinc finger CCHC-type profile. 459 472 IPR001878 GO:0003676|GO:0008270
Rops8g04256 501 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Rops8g04256 501 Pfam gag-polypeptide of LTR copia-type 253 388 - -
Rops8g04256 501 Pfam DEK C terminal domain 5 59 IPR014876 -
Rops8g04256 501 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 166 IPR045125 GO:0003713|GO:0060261
Rops8g04256 501 Gene3D Transcriptional Coactivator Pc4; Chain A 92 168 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04256 Rops-Chr8 85175940 85179030 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Rops8g04256 Retrotran_gag_2 1.9e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04256 - - gmx:100800963 579.326