Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04243 ATGATAATCAAGCGGAATATGAAATCTGGACTGCAGAACCTAAAGCGGTGTAACCTAGAAGAAGAAAACAAGGATTATATGTATTCGCCGATTCAGAAGAAGCAGAGGGTTAACGGATTTTGTTCTGTCAGTAAGGGTGAAGAATTCAGCAACGTTTCGGGTTCTGAGTCCACTGAAGCATCAAATTCTATGGAGTTGAATGGTGGTGTAAGTAGAAAAGCACCACCTCCTCCTTTGTTGCGGTCATCTAGAGGCAGAGTTCAGATGCTTCCATCCAGGTTCAATGACTCTATTCTTGATACATGGTTGAATAATGGAAGAATCAAAATAAAAAACAAAAGCATAGACTTTGAAGATGATAATAGTTTACAAGACATCGGAAGGGAATATGTTGTGAAACAGGGAAAGGGAAATGAATGTGCCTCAAAAAATTCTCTTTGTTTCCCATATTCTGCTGAAACAGAGTTGGGTGGATTGGGTTTCAATGATTTTGATTACGAGAAGCATGCTAACTCGTTCAATAGCATAAAAAAGACGGTTAATGGGAGTCATTCAATGTTGGTTAAGACAGATGGTGATGGAAATGGCAAAAAGAGGAAGGACATTTACAAACCAGAGGATTTTGCTTTGGGTGATGTTGTTTGGGCAAAATGTGGGAAGCGATATCCGGCATGGCCTGCTATTGTAATTGATCCCATCTTGCAAGCTCCCAAGTCCGTTCTCAGCTGTTGTGTTCCTGGTGCAATTTGTGTTATGTTTTTTGGTTACTCAAAAAATGGAAAGCAAAGGGACTATGCATGGGCGAAGCAGGGGATGATATTTCCCTTCTTGGAATTCATGGACAGATTCCAGGGGCAGACCCGATTGTTCAAGAGCAAACTAAGTGATTTTCACGTGGCAATGGAGGAGGCAATGCTGGCAGAAGATGGCATTCTGGACCCACACTTGGGAGCTGAGCAAATTATGGAAGGTGAAGGTTCCTATGATGATCAGGAATATTACTGCCAAAACCAGGATACAATATCTTGTGCTGGTTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAAATTAAGGATTCAAGCTGTGGCCCTCGGCATTATTGTAAACCCTGTGCAAAGTTATTAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATAGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAAGGAAAGTTTAATTGTAAATTATCAGCCTCACAAACATATCAATCAAACATTAAATCAGTAGAGAATTGCCAAAATCCTTTGTTACCTGAAAAGCTAGCGGTGGTGTGCAATGGCATGGAAGGAATTTATATTCCAAAGCTTCATTTAGTTATGTGCAAGTGTGGCTCGTGTGGTTCAAGGAAGCAGAGACTGGCTGAATGGGAACGGCATGCAGGTTGCAAAGCCAAAAAGTGGAAATATAGTGTGCAAGTAGAAAGCACAATGCAACCACTAATAAAATGGATCACACAACACCGTTCCCAAGCTGGAATTTCCCTGCAGTTAGATCAGAAACAGGTGCTTTCTTTTTTACAAGAGAAGTATGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCGATTTGCAGATGGGTCGAAGATTGGGAAGATAACAAGATTATCATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGAGTGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGCAGAGTCTGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTGATGTGGAGATGTTGTGGGTTCACGTAACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTCCAAAACCATGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTCCTAATTCCTTTTTAAAGACTTGCGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGCGCGTCAAGAATGGGATATAGCATGGAATTGCATTCTACAAAGAAGAATGGGACTCAAATAACAAAGACTCTAATATATTGTGCAGTTCACAGGGTACCAAATCCTGATTCAGTCCTGGTTGTGCACACACCCCTGGGGGTATTCTCTCCAAGAACTTCACTTCAAAATCACAAGGGAAGCTTTAGAGGATCAAGGCTGGTTTCATCAAAGAATATAGAACTCCTTGAATCCCCAAGCTCTGAAAGTGATGAGATTGAGGCACTATCTGCTGCCAGGTGTCGTGTGTACAGAAGGCCTCCCAATAAGAAGGATGATGGACCAATAATTCACTTGCTTGGTGGGCCAAATATTCATTCTTTAAATGAAATAACTCAATTGAACAGCAATAAGGATGTCGAAGTATTTTCTTCTTTCAAGGAACGTCTTCAACATTTACAGAAAACGGAAAATCATAGAGTTTGCTTGGGAAAATCAGGCATTCATGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGAGAAATGGTTGTTGAGTATCGTGGTGAGCAAGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCTAAGTACCGTTCAGAAGGCAAAGACTGTTATCTATTCAAGATCAGTGAGGAAGTGGTGATTGACGCAACAGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGTCTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGGCCAATGTTTCTGCTGGTGATGAACTAACGTATGATTACTTGTTCGATCCAGATGAGAGAGATGAACTCAAGGTTCCCTGCTACTGTAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 2985 0.4141 MIIKRNMKSGLQNLKRCNLEEENKDYMYSPIQKKQRVNGFCSVSKGEEFSNVSGSESTEASNSMELNGGVSRKAPPPPLLRSSRGRVQMLPSRFNDSILDTWLNNGRIKIKNKSIDFEDDNSLQDIGREYVVKQGKGNECASKNSLCFPYSAETELGGLGFNDFDYEKHANSFNSIKKTVNGSHSMLVKTDGDGNGKKRKDIYKPEDFALGDVVWAKCGKRYPAWPAIVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWAKQGMIFPFLEFMDRFQGQTRLFKSKLSDFHVAMEEAMLAEDGILDPHLGAEQIMEGEGSYDDQEYYCQNQDTISCAGCGLMLPCKTMKKIKDSSCGPRHYCKPCAKLLKSKQYCGICKKIWHHSDSGNWVCCDGCNVWVHAECDKISSKLFKDLENIDYYCPDCKGKFNCKLSASQTYQSNIKSVENCQNPLLPEKLAVVCNGMEGIYIPKLHLVMCKCGSCGSRKQRLAEWERHAGCKAKKWKYSVQVESTMQPLIKWITQHRSQAGISLQLDQKQVLSFLQEKYEPVYAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNHEAMEPASGILKIPPNSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMELHSTKKNGTQITKTLIYCAVHRVPNPDSVLVVHTPLGVFSPRTSLQNHKGSFRGSRLVSSKNIELLESPSSESDEIEALSAARCRVYRRPPNKKDDGPIIHLLGGPNIHSLNEITQLNSNKDVEVFSSFKERLQHLQKTENHRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKANVSAGDELTYDYLFDPDERDELKVPCYCKAPNCRKFMN* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04243 994 ProSiteProfiles Post-SET domain profile. 978 994 IPR003616 -
Rops8g04243 994 ProSiteProfiles PWWP domain profile. 210 279 IPR000313 -
Rops8g04243 994 MobiDBLite consensus disorder prediction 49 68 - -
Rops8g04243 994 ProSiteProfiles Extended PHD (ePHD) domain profile. 617 732 IPR034732 -
Rops8g04243 994 ProSiteProfiles Zinc finger PHD-type profile. 379 435 IPR019787 -
Rops8g04243 994 SUPERFAMILY FYVE/PHD zinc finger 564 628 IPR011011 -
Rops8g04243 994 CDD PHD_TCF19_like 382 432 - -
Rops8g04243 994 Pfam PWWP domain 211 307 IPR000313 -
Rops8g04243 994 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 614 IPR013083 -
Rops8g04243 994 Gene3D SET domain 771 994 IPR046341 -
Rops8g04243 994 Pfam PHD-finger 578 612 - -
Rops8g04243 994 Pfam PHD-zinc-finger like domain 619 731 - -
Rops8g04243 994 ProSitePatterns Zinc finger PHD-type signature. 566 611 IPR019786 -
Rops8g04243 994 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 436 IPR013083 -
Rops8g04243 994 Pfam SET domain 863 968 IPR001214 GO:0005515
Rops8g04243 994 Coils Coil 993 994 - -
Rops8g04243 994 SUPERFAMILY FYVE/PHD zinc finger 378 439 IPR011011 -
Rops8g04243 994 CDD PHD_ATX3_4_5_like 565 611 IPR042011 -
Rops8g04243 994 PANTHER PHD FINGER PROTEINS 12 971 - -
Rops8g04243 994 FunFam Histone-lysine N-methyltransferase 615 734 - -
Rops8g04243 994 SMART PostSET_3 978 994 IPR003616 -
Rops8g04243 994 Gene3D - 198 311 - -
Rops8g04243 994 ProSiteProfiles SET domain profile. 852 969 IPR001214 GO:0005515
Rops8g04243 994 SMART PWWP_4 208 277 IPR000313 -
Rops8g04243 994 FunFam Histone-lysine N-methyltransferase 826 994 - -
Rops8g04243 994 SUPERFAMILY SET domain 844 991 IPR046341 -
Rops8g04243 994 CDD SET_SETD1-like 841 990 - -
Rops8g04243 994 SMART PHD_3 381 433 IPR001965 -
Rops8g04243 994 SMART PHD_3 676 732 IPR001965 -
Rops8g04243 994 SMART PHD_3 565 612 IPR001965 -
Rops8g04243 994 MobiDBLite consensus disorder prediction 49 79 - -
Rops8g04243 994 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 733 IPR013083 -
Rops8g04243 994 ProSiteProfiles Zinc finger PHD-type profile. 563 614 IPR019787 -
Rops8g04243 994 SUPERFAMILY Tudor/PWWP/MBT 201 309 - -
Rops8g04243 994 SMART set_7 852 975 IPR001214 GO:0005515
Rops8g04243 994 Pfam PHD-finger 381 434 IPR019787 -
Rops8g04243 994 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 994 IPR025780 -
Rops8g04243 994 CDD PWWP_AtATX3-like 211 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04243 Rops-Chr8 85052521 85061055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04243 566 718 C2H2 Transcription Factor Family AT3G14740 35.185 4.13e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops8g04243 zf-HC5HC2H_2 1.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04243 - - lja:Lj1g3v5034780.1 1510.35