Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04242 ATGAACATCTTGAAGCTGCTCTTTCACTTCTTCATCTTTTTCCGTGTCATATATGCCTCACATGATTGCCAATATTCTTGGTGCAGCGACAATAACATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTCAGGAAGATCATTATTGTGGCTATCCTGGTTTCAAGTTAAGTTGTACTAATGATAGCAAAACAGTTCTGAAACTTCCTTATACCAGAGACTTCTATGTCCGCAACATCAACTATCTCACACATCGGATACAAGTCTATGACCCTGATGGTTGCCTTCCAAAGCGTCTTCTAAGCCTCAATCTTTCAGGTTCTCCCTTTGTTGCTATCCTTCTTCGTAACTACACCTTCTTAAGCTGCCCAACTCCGAGCACAGGGTCAGAATTCGTTCCTGTTGACTGTCTTAGCAATTCTACACATTTTGTGTCAGCTGTTCCTTCAGTGAACTTGACCAGTTCATTGCCTGAGTCTTGCTATGTTATTAGAAACCTCTCAGTTCCAGTTGCAACGCCAGGACGATATGCTGACATTTTCAGAGATCACCTTGGTGAAGATCTTCGATTAACATGGTATTCACCTGACTGTAGATATTGTGAATTACAAAAGGGCTTGTGCGGATTTGAGAGCAGAAACAACTATCAAGTTCGTTGTTTCCCTGAACACCAAACGGGTCGTTCACATGATGGTTTTCGAGTTTTTAGAATCTTCGTATTAACCATCGCTGGTACAGCTGTGATATGTGCCACTGGGATGGCATGTTTCACCTGCTTCAAGCGCAGAAGAGGCTTGACACTCAGAAGGTTTGCACCAATGGCAATATCACCACAACCTGCCATTACTACGATGGGTCTGGATGAGTCTATAATTGAGTCATTTCAGAAGCTGGTACTAGGTGAGAGCAGAAGACTGCCCGGAAACAATGACGGATGTTGCTCAATATGCCTGTCAGAGTACAACAGCAAGGAGACAATCAGATGCATACCTGAATGCTCACACTGTTTCCATGCTCACTGCATAGATGAATGGCTTCGCATGAACAGTACATGCCCACTTTGCCGTAACTCTCCCTCCCCTTCTTCTCCTGTTCCTCTTTTGTCCAGTAACACTTGA 1116 0.4364 MNILKLLFHFFIFFRVIYASHDCQYSWCSDNNILIRFPFQLEGQEDHYCGYPGFKLSCTNDSKTVLKLPYTRDFYVRNINYLTHRIQVYDPDGCLPKRLLSLNLSGSPFVAILLRNYTFLSCPTPSTGSEFVPVDCLSNSTHFVSAVPSVNLTSSLPESCYVIRNLSVPVATPGRYADIFRDHLGEDLRLTWYSPDCRYCELQKGLCGFESRNNYQVRCFPEHQTGRSHDGFRVFRIFVLTIAGTAVICATGMACFTCFKRRRGLTLRRFAPMAISPQPAITTMGLDESIIESFQKLVLGESRRLPGNNDGCCSICLSEYNSKETIRCIPECSHCFHAHCIDEWLRMNSTCPLCRNSPSPSSPVPLLSSNT* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04242 371 Pfam Wall-associated receptor kinase C-terminal 156 221 IPR032872 -
Rops8g04242 371 ProSiteProfiles Zinc finger RING-type profile. 313 355 IPR001841 -
Rops8g04242 371 SUPERFAMILY RING/U-box 306 359 - -
Rops8g04242 371 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Rops8g04242 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 360 IPR013083 -
Rops8g04242 371 CDD RING-H2_EL5-like 312 355 - -
Rops8g04242 371 SMART ring_2 313 354 IPR001841 -
Rops8g04242 371 Pfam Ring finger domain 313 355 IPR001841 -
Rops8g04242 371 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 359 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04242 Rops-Chr8 85049788 85051303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04242 18 361 C3H Transcription Factor Family AT2G46495 44.633 1.91e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04242 - - gmx:100799895 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04242 8 85049788 85051303 Rops4g01628 4 39649245 39651844 PCT