Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04241 ATGGAGTATAACAGCAACAACAGCAAGATGTACAATCTGTTCGTGAAGCACTTGGATGGGAAAACCCTAACCCTATTATTCCCCTCTCCGATCCTTTACTCCAGTTCCATCAAGGATCGCCTTTTCGAACTCACGGGAATCCCCACCCAACACCAGCGCCTCGTGACGGGTTGCCGCCACCTGAACGACGAGAAATCGGTAATATGTTGTTCGCCGGAAGAAGGCGGGAACATGTTCCCGTCGGTGAGGCTTCTTCTGCGGCTGAAAGGCGGCAAGGGAGGGTTCGGATCGCTTCTTCGTGGGGCTGCAACGAAGGCTGGGCAGAAGAAAACGAACAATTTTGATGCTTGTAGGGATATGAGTGGTCGAAGATTGAGACACGTGAATGCTGAGAAGAGGTTGGAGGAGTGGAAGGCTGGGGAAGAAGAAAGAAGGCTCGAGAAGGTTGCAGAAGAGTTTCTGAAGAAGCAGATGAAGAAGGGTAACCGTAACGGTAAAGGTGATGCTGAGGCACACAAATATGTCGCTAAATATAGGGAGGAGTCTGAACGCTGCGTTGCAGAGGTTGCCTTGTCCGTTAAGGAAGCTTTATCCTCTAAGCGCAAGTCTTCTTCACAATCAGAAGTTTCCCCTCCCCGTGATGCCAAGAAATTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATGATTCTGATGATGATGAGGGGGAAAATGAGAAATCTGTGGTGTTAAATAACCAGAATGAGTCTGGCTCGAATAAGTCTGAAGACAGTTCAGGTTATGTGACTGGAAAGAAGCAGGATGGAGACTCATCTGGTGCTGGCTCATGTGAAAGTGGATCTGAAGAGGAGAAGGAAACTGTTGTCGTAGAAGCAGGCAAAATGGAATCTGTTGGGTGCCAGAATGGTGAAACCTCTCAGGCCAAACTGAGTGTTGCTGCTGAACTTGTAATAAATGATGAGATGATGGAGGCTAATGCTATGCCTTGTTCAGAATCAATGGTTTCTGGGATTAATGCTGAAGATAATGGATATCAGGGTTGCAATGGAGTTGTATCTGACAAGTCTGATGGCACTGTTAATCAAGCCTCAAATATTATGAGCTCCGAAACTGTGGATGGTGCAAGCAAATTTAATGATATGGTAATTGATGGATCTCTTGAGCATAAAGCAGTAGTCAATGAAGAAAGCTCACCAAGCACTAGTGTTCCAGCATTGGAGGAGCCTTTGAATTTTGATGCTTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAGAAGTTGAAGTTTGAACTGCAGTCACGTGGTTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCTAGGCTTTTTCTTTTAAAATCGACTCCCCTGGATAAACTTCCAAAGAAGCTGCTTGCAAAGAAATGA 1425 0.4568 MEYNSNNSKMYNLFVKHLDGKTLTLLFPSPILYSSSIKDRLFELTGIPTQHQRLVTGCRHLNDEKSVICCSPEEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEEFLKKQMKKGNRNGKGDAEAHKYVAKYREESERCVAEVALSVKEALSSKRKSSSQSEVSPPRDAKKLKIWMGKRKLNESDSDDSDDDEGENEKSVVLNNQNESGSNKSEDSSGYVTGKKQDGDSSGAGSCESGSEEEKETVVVEAGKMESVGCQNGETSQAKLSVAAELVINDEMMEANAMPCSESMVSGINAEDNGYQGCNGVVSDKSDGTVNQASNIMSSETVDGASKFNDMVIDGSLEHKAVVNEESSPSTSVPALEEPLNFDAFNSAAELEVLGLEKLKFELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04241 474 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 156 IPR024974 -
Rops8g04241 474 MobiDBLite consensus disorder prediction 212 231 - -
Rops8g04241 474 Gene3D - 3 93 - -
Rops8g04241 474 SUPERFAMILY Ubiquitin-like 5 75 IPR029071 -
Rops8g04241 474 PANTHER SPLICING FACTOR SF3A-RELATED 12 473 - -
Rops8g04241 474 CDD Ubl_ubiquitin_like 13 79 - -
Rops8g04241 474 MobiDBLite consensus disorder prediction 197 211 - -
Rops8g04241 474 MobiDBLite consensus disorder prediction 245 282 - -
Rops8g04241 474 Pfam Replication stress response SDE2 C-terminal 401 473 IPR025086 -
Rops8g04241 474 MobiDBLite consensus disorder prediction 197 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04241 Rops-Chr8 85046725 85049559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04241 407 473 C2H2 Transcription Factor Family AT5G06160 47.761 1.07e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04241 K25059 - gmx:100781694 567.385