Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04239 ATGATGAAGACGAACTTGAGAAGACGTTCAGTGGTCCGCCCTTTAAGAGATGGACAGACAGTTCTTGATCCAAAGGATCCTATGCTTCAGAAATGGAACAAAATCTTTGTAATCACAAGTGTGATGGCAGTCTCTGTGGATCCACTGTTCTTTTATATTCCAGTGACCGTTGTTAAAGAAAAATGTCTTGATTTGGATAGAACTTTGAAGATTACTGCTTGTGTTCTTCGCACCTTCTTTGATCTTTTCTACATTCTGCGCATAATCTTTCAGTTTCGAACAGGGTTTCTTGACCCTTCTTCCCGTGTTTTTGGATGGAGTGAGCTGATTTCGGATCCTCTGGTTATAATGAAAAGATACTTAAGTTCACACTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGGTTGTTTTAGTTATAATTCGAAACCTGAAAAACTCAGCTCCATTAGCAAAGGATTTGTTGAAGTATACAATTCTAATCCAGTATGTGCCAAGGCTTCTGCGGATCTATCCACTATTCAGAGAAGTAACTAGAACTTCTGGCATATTGACTCAGACAGCATGGGCTGGGGCTGCTCATAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTATCTGGTATCTGTTTTCTGTAGAATCAGAGGTGCGGTGCTGGAGCCGAGTGCTAAATGGAGAATCATACTTGGGCTGTGGACACCGCAATTCAAGTGTCTTCCCACTTCTCAATAAGTATTGCTCTTTGGTTGACCCTGATCAAATCGATGACGTAAACGTCTTCAATTTTGGAATATTTTTCGAAGCTCTACAATCACGTGTGGTAGAGTCAACAACTGATTTTCGTGGGAAGTTATTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACAAATGCGGTGGAGATAGCCTTTGCAGTTTTCATTTCCATCTTTGGGTTGGTTTTATTCTCTTTACTTATTGGAAACATGCAGGAATATCTGCAATCTATAACTGTTACAGTGGAAGAGATGAGAGTGAAGTGGCGGGACGCAGGACGGTTGGAACGATGGATGTCCAACCGTATGCTACCTGAATTTTTGAAGGAAAGGATTAGAAGGAATGAACAATACAAGTGGCAAGAAAATATGGGTGTTGATGAGGAGGCATTAATTTGCAACCTCCCTAGAGATCTCAGAAGGGAAGTAAAGCGTCACCTTTGCTCAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAACATGGATGGGCAATTATTGGATGAAATGTGTGATAGACTGAAGTCAGTCCTTTATACAGAGAAGACCTACATCATTCGTGAAGAATATCCCATTTATGAGATGATTTTCATTATGCGTGGAAGAGTTGCTATTATGACCACAAATGGTGGAAGAACTGGTTTCTTCAACCCCTTATTTCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTCGATCCTCACTCCTCAAATTTTCCCATTTCAACCCGAACAATAGAAACTATATCTGAAGTTCAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTCACGGCAAACAGCTCCAGCATCTCTTCAGGTTCTATTCCCCTCAATGGAAGATATGGGCTGCGTGTTTCATACAAACAGCTTGGCGTCGATACAAGAGAAGGAAGATGGAGAGGTCATTACGTGAAGCAGAAGCAGAAGACGAGCTACAAGATGATTCGGCAAATGAGGACACAACAGAATGCCGCAGAGACCACTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACAGAGACCACTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGGAAACACTAGGGGTGCGGTTTAATATCACTGGATCAAATTGTCTATCTGATATAACAGCAGATTTGTCAAACTTGGGCGATCTAGGAACTCTGGGAAACTATTCTGGTTCACCATTCATGCAGTCCGATTCAGATATATTGCTTGAATCTTCGTATCAAAAGGACATTAGTAATGAGTGTTTTCTGCAAAGTTTACTTGTTCTCACCGGAAGCAGAAGCAGTTTAATCATGAATGCAAAGGGACATAAATTTGTGAGGTTTGAGGACTGGAAATCAGAGTCATCATCTTTTAGTTTAGAGCAGGAAGATTCTGTAAACAATGGATATCGCAATAGAAAAGGTAGACCAAGTGTTAGCGCTGTATTGAAGAGTATTGGAAGAAGACTCGAGAGTGGATCTGAGAAGATGAAGAACTTGAAAAGACCTTCAGCTGTCCACCCTGTAAGCGATGGACAGACAAAAAAGATGGCTTCTAAGAGCAAAATTCTTGACCCACAGGGGCCAATGCTTCAGAAATGGAACAAAATCTTTGTAATCACGTGTGTGATGGCAGTCTCTGTGGACCCTTTCTTCTTTTACATTCCAGTGATTGTTGATCAAGGCAAATGTCTTGATTTGGATGGAGCTTTGCAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTTCGAACAGGGTTTATTGCCCCTTCTTCTCGTGTTTTCGGAAGGGGTGAGTTGATTGAGGATCCCGTGGCTATAATGAAAAGATACTTAAGTTCACACTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGGTGGTTGTTTTAGCTATAATCCCGATCATAAAAGACAAAGCTCCATTTGTAGCCAAGGAAGTGTTGAAGTATACAGTACTAATCCAGTACGTGCCAAGGCTTCTGAGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCATGGGCCGGGGCTGCATATAATCTTTTTCTCTATATGCTTGCAAGTCATGTGGTTGGAGCTAATTGGTATCTGCTTTCAGTAGAATCTGAGGTGCGCTGCTGGAGGCGAGAGATGAGGAATGCTTCGCTTTATCATGAATCATACATGGGTTGTGGAACCCACAATTCAACCGTCTTTTCACTTCTCAATCGTACTTGCACTGTGGTTGACCCTGATCAAATCAAAGATGCAAACTTCTTCAATTTTGGAATATTTTTTGATGCTCTAGAATCACGTGTGGTAGCATCAACAACTGATTTTCCTGAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTACGCAATTTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACATATATCGTGGAGATAGCCTTTGCAATCTTCATTGCTATCTTTGGATTGGTTTTGTTCTCATTACTTATTGGAAACATGCAGAAGTATCTGCAATCTACAACTGTTAGAGTGGAAGAGATGAGAGTGAAGAGGCGTGATGCAGAACAGTGGATGTCCCACCGTATGCTACCTGACAAGTTGAAGGGAAGAATTAGAAGGTATGAACAGTACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGCAACCTTCCTAAAGATCTCAGAAGGGACATAACACGTCATCTTTGCTTAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGGGCAGTTGTTGGATGCAATATGTGATAGACTGAAGCCAGTACTTTATACAGAGAAGAGCTGCATTGTTCGTGAAGAAGATCCGGTTGATGAGATGCTTTTCATTATGCGTGGAGAAGTTGCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTATTTCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCCAGCTCCTCCTCAAATCTTCCCATTTCAACTAGAACAGTGGAAACTGTATCAGAAGTTGAAGCCTTTGCTCTCACGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTCTTAACAGCAAACAGCTCCAGTACACTTTCAGGTTCTATTCCCCACAATGGAAGACATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTAGATACTGGAAAAAGAAGATTGAGAGGTCATTACGTGAAGCAGAAGATAAGCTACAAGATGCATTGGCAAATGAGGATGGCTCCACTCTAAGTCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCAAATGCATTACGAAACTTGAGAGAAAATAACAGACACAACAGAATGCCGCAGAGACTACTGCCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTTCTCAGAATCACTAG 4308 0.4171 MMKTNLRRRSVVRPLRDGQTVLDPKDPMLQKWNKIFVITSVMAVSVDPLFFYIPVTVVKEKCLDLDRTLKITACVLRTFFDLFYILRIIFQFRTGFLDPSSRVFGWSELISDPLVIMKRYLSSHFIIDILSIIPLPQVVLVIIRNLKNSAPLAKDLLKYTILIQYVPRLLRIYPLFREVTRTSGILTQTAWAGAAHNLFLYMLASHVVGAIWYLFSVESEVRCWSRVLNGESYLGCGHRNSSVFPLLNKYCSLVDPDQIDDVNVFNFGIFFEALQSRVVESTTDFRGKLFYCFWWGLRNVSSLGQNLKTSTNAVEIAFAVFISIFGLVLFSLLIGNMQEYLQSITVTVEEMRVKWRDAGRLERWMSNRMLPEFLKERIRRNEQYKWQENMGVDEEALICNLPRDLRREVKRHLCSALVKKVPMFENMDGQLLDEMCDRLKSVLYTEKTYIIREEYPIYEMIFIMRGRVAIMTTNGGRTGFFNPLFLKAGDFCGEELLTWAFDPHSSNFPISTRTIETISEVQAFALMADDLKFVASQFRRLHGKQLQHLFRFYSPQWKIWAACFIQTAWRRYKRRKMERSLREAEAEDELQDDSANEDTTECRRDHYLCYLQSQLSQISQRPLPLLPPKPAEPDFTAQETLGVRFNITGSNCLSDITADLSNLGDLGTLGNYSGSPFMQSDSDILLESSYQKDISNECFLQSLLVLTGSRSSLIMNAKGHKFVRFEDWKSESSSFSLEQEDSVNNGYRNRKGRPSVSAVLKSIGRRLESGSEKMKNLKRPSAVHPVSDGQTKKMASKSKILDPQGPMLQKWNKIFVITCVMAVSVDPFFFYIPVIVDQGKCLDLDGALQITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELIEDPVAIMKRYLSSHFIIDILSIIPLPQVVVLAIIPIIKDKAPFVAKEVLKYTVLIQYVPRLLRIYPLFKEVTRTSGILTETAWAGAAYNLFLYMLASHVVGANWYLLSVESEVRCWRREMRNASLYHESYMGCGTHNSTVFSLLNRTCTVVDPDQIKDANFFNFGIFFDALESRVVASTTDFPEKFFYCFWWGLRNLSSLGQNLKTSTYIVEIAFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDKLKGRIRRYEQYKWQENRGVEEEALIRNLPKDLRRDITRHLCLALVKKVPMFEKMDGQLLDAICDRLKPVLYTEKSCIVREEDPVDEMLFIMRGEVATMTTNGGRTGFFNSLFLKAGDFCGEELLTWALDPSSSSNLPISTRTVETVSEVEAFALTADDLKFVASQFRRLLNSKQLQYTFRFYSPQWKTWAACFIQAAWRRYWKKKIERSLREAEDKLQDALANEDGSTLSLGATIYASRFAANALRNLRENNRHNRMPQRLLPLLPPKPAEPDFTSQNH* 1436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04239 1435 CDD CAP_ED 1206 1338 IPR000595 -
Rops8g04239 1435 SUPERFAMILY cAMP-binding domain-like 360 548 IPR018490 -
Rops8g04239 1435 SUPERFAMILY Voltage-gated potassium channels 802 1128 - -
Rops8g04239 1435 MobiDBLite consensus disorder prediction 1412 1435 - -
Rops8g04239 1435 Gene3D - 814 1130 - -
Rops8g04239 1435 Gene3D - 41 346 - -
Rops8g04239 1435 FunFam Cyclic nucleotide-gated ion channel 1 1204 1322 - -
Rops8g04239 1435 Gene3D Jelly Rolls 421 540 IPR014710 -
Rops8g04239 1435 Gene3D Jelly Rolls 1204 1324 IPR014710 -
Rops8g04239 1435 Pfam Ion transport protein 811 1134 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops8g04239 1435 Pfam Ion transport protein 32 347 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops8g04239 1435 ProSiteProfiles cAMP/cGMP binding motif profile. 1206 1290 IPR000595 -
Rops8g04239 1435 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 787 1430 - -
Rops8g04239 1435 SUPERFAMILY Voltage-gated potassium channels 24 342 - -
Rops8g04239 1435 ProSiteProfiles cAMP/cGMP binding motif profile. 423 507 IPR000595 -
Rops8g04239 1435 SUPERFAMILY cAMP-binding domain-like 1135 1324 IPR018490 -
Rops8g04239 1435 MobiDBLite consensus disorder prediction 769 789 - -
Rops8g04239 1435 Coils Coil 1359 1379 - -
Rops8g04239 1435 FunFam Cyclic nucleotide-gated ion channel 1 1133 1197 - -
Rops8g04239 1435 SMART cnmp_10 423 553 IPR000595 -
Rops8g04239 1435 SMART cnmp_10 1206 1337 IPR000595 -
Rops8g04239 1435 FunFam Cyclic nucleotide-gated ion channel 1 421 538 - -
Rops8g04239 1435 CDD CAP_ED 423 553 IPR000595 -
Rops8g04239 1435 Gene3D Helix hairpin bin 351 414 - -
Rops8g04239 1435 Gene3D Helix hairpin bin 1133 1197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04239 Rops-Chr8 84992081 85020585 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04239 8 639 Ion Channels AT5G53130 58.079 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04239 K05391 - gmx:100797784 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04239 8 84992081 85020585 Rops4g01626 4 39634230 39640091 PCT