Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04238 ATGACGAAGACGAAGATGAAGAACTTGAAAAGACGTTCAGTTGTCCGCCCTTTAAGAGATGGACAGACAGCTCTTGATCCAAAGGATCCTCTTCTTCAGAAATGGAACAAAATCTTTGTAATCACAAGGTTCATTGCCCCTTCTTCCCGTGTTTTTGGAAGGGGTGAGCTGGTTTCGGATCCCGTGGCTTTAATGAAAAGATACTTAAGTTCTCACTTCATCTTTGACATTCTATCAATTATTCCACTTCCTCAGGTGGTTGTTCTAGCTATAATTCCAAACCTGAAAAATTCAGTTCCATTAGTAGCAAAGGATTTGTTGAAGTATGTAGTACTAATCCAGTATGTACCAAGGCTTCTGCGGATCTACCCACTATTCAAAGAAATTACTAGAAGTTCTGGCATATTGACTGAGACAGCATGGGCTGGGGCTGCTCACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTATCTGGTATCTGCTTTCAGTAGAATCAGAGGTGCGGTGTTGGAGGCGAGAGATGAAGAATGCTTTGCTTTATCACGAATCATACCTGAGCTGTGGACCCCGCAATTCAAGTGTCTTCCCACTTCTCAATGGGACTTGCAATTTGGTTGACCCTGATCAAATCGAAGACGTAAACGTCTTCAATTTTGGAATATTTTTCGAAGCACTACAATCACATGTGGTAGATTCAACAACTGATTTTGATGAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGAATATCTGCAATCTATAACTGTTACAGTGGAAGAGATGAGAGTGAAGTGGCGGGAAGCAGGACGGTTGGAACGATGGATGTCCAACCGTATGCTACCTTTAGATTTGAAGGAAAGAATTAGAAGGAATGAACAGTACAAATGGCAAGAAAACAGGGGTGTTGATGAGGATGCATTAATTCGCAACCTCCCTAGAGGTCTCAGAAGGGACACAAAGCGTCACCTTTGCTTAGATTTAGTTAAAAGAGTGCCAACATTTGAGATCATGGATGAGGAGTTATTAGATGAAATGTGTGATAGACTGAAGTCAGTCCTTTATCCAGACAGGACCTACATTGTTCGTGAAGAATATCCAGTTTATGAGATGCTTTTCATTAGGCGGGGAAAAGTTGTTAGTACGACCACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCATTTCTCATGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTCTATCCTCACTCCTTAAATTTTCCCATTTCAACAAGAACAATAAAAACTATATCTGAAGTTGAAACCTTTACTCTCATGGCTGATGACTTGAAGTTTGTTGTTTCCAAATCTCGACGTCTTCACGGCAAACAGCTCCAGCACATTTTCCGGTTCTATTCCCTGCAATGGAGGACATGGGCTGCCTGTTTCATACAAGAAGCTTGGTGTCGATACAAGAGAAGGAAGATGGAGAGGTCATTACGAGAAGCAGAAGAGGAGCTACAAGATGATTCGGCAAATGAGGATGAGTCCACTCTCAGTCTTGGTGCGACAATATATGCATCAAGGTTTGCTGCAAAAGCATTACGAACCTTGAGAGAAAATAACAGAGACGGCAGAATGCCGCAGAGACTCCTACCTCTGTTACCTTCAAAGCCAGCTGAGCCAGATTTCAGTGCTCAGAAGCACTAG 1701 0.4256 MTKTKMKNLKRRSVVRPLRDGQTALDPKDPLLQKWNKIFVITRFIAPSSRVFGRGELVSDPVALMKRYLSSHFIFDILSIIPLPQVVVLAIIPNLKNSVPLVAKDLLKYVVLIQYVPRLLRIYPLFKEITRSSGILTETAWAGAAHNLFLYMLASHVVGAIWYLLSVESEVRCWRREMKNALLYHESYLSCGPRNSSVFPLLNGTCNLVDPDQIEDVNVFNFGIFFEALQSHVVDSTTDFDEKFFYCFWWGLRNEYLQSITVTVEEMRVKWREAGRLERWMSNRMLPLDLKERIRRNEQYKWQENRGVDEDALIRNLPRGLRRDTKRHLCLDLVKRVPTFEIMDEELLDEMCDRLKSVLYPDRTYIVREEYPVYEMLFIRRGKVVSTTTNGGRTGFFNSSFLMAGDFCGEELLTWAFYPHSLNFPISTRTIKTISEVETFTLMADDLKFVVSKSRRLHGKQLQHIFRFYSLQWRTWAACFIQEAWCRYKRRKMERSLREAEEELQDDSANEDESTLSLGATIYASRFAAKALRTLRENNRDGRMPQRLLPLLPSKPAEPDFSAQKH* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04238 566 CDD CAP_ED 340 469 IPR000595 -
Rops8g04238 566 ProSiteProfiles cAMP/cGMP binding motif profile. 339 468 IPR000595 -
Rops8g04238 566 Pfam Ion transport protein 64 253 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops8g04238 566 Gene3D - 28 262 - -
Rops8g04238 566 SMART cnmp_10 339 469 IPR000595 -
Rops8g04238 566 MobiDBLite consensus disorder prediction 538 566 - -
Rops8g04238 566 Coils Coil 490 510 - -
Rops8g04238 566 SUPERFAMILY Voltage-gated potassium channels 64 251 - -
Rops8g04238 566 Gene3D Helix hairpin bin 273 329 - -
Rops8g04238 566 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 256 561 - -
Rops8g04238 566 Gene3D Jelly Rolls 337 456 IPR014710 -
Rops8g04238 566 SUPERFAMILY cAMP-binding domain-like 276 458 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04238 Rops-Chr8 84988808 85007966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04238 42 561 Ion Channels AT2G46430 56.306 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04238 K05391 - gmx:100797784 783.867