Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04229 ATGGAAGAGAACACCAAGAGGGAACATGTTAGTCTGATCAATGAACTAATCCAAGGAAAGGAGCTAGTAAAGCAGCTCAGTAACCATTTGTTCTCTTCTTCTCCATCATCCCATGAAACCAATGAATTCTTGGTTGACAAAATACTTTCCTCCTATGAGAAAGCACTCACCATGCTGAACTGTGGGTCTAATGTGGGAGAGACTAAGACCACCAATGTCAACATGATGAATTCCCCTTGTTCTTTTACAAATGAGAGCCCCAGAAGTGAGGTCATGGACCTTGAATTTAAGCACAAATCTGTCTTCAAGAAAAGAAAGACCATGCCCAGATGGACAGAGCAAGTGAAGATTTGCTCAGAAACAGGACTTGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATATGGGCAAAAGGACATTCTTGGAGCTAAGTTTCCCAGAGGATATTACAGATGCACACATAGAAATGTACAAGGATGTCTGGCAACAAAACAAGTTCAAAGATCAGATGAAGACCCAACAATAATTGAGGTGACATACAGAGGAAGACACACATGCACGCAAGCTAAGCATTTAAAGAAGGAATTTCCATCAAAAACAAAGATGGGTTTAGGGGGAAATCAACTCCACAATGATAAAAAGAATCAACTACTAGTACAGGAGAAAATCCAACAAACCCCAGAGGCAATTTTCACGTTTAAAGCAGAGCATGAAGTCAAAACAGAGAACTTGGAAACCAAGAAGGATATCTTCCCTTGGTTTTGCTTTCAGTCTCCATCCATTGGATCAGAAAACGAAGACAACAACATATTATCCGAGACCATGATGGAAAACCATTTCATAGAAAGCTTTTCTCCTGCATTCATATCACCAGTAACTTCAGATTCAAATTTTCTCTGTTTGTCAGCATACAACTTGGGTAGCAATGGACTAAGCCAAAACGTACAAACCTCAGAATCTGATATCACTGAGATAGTTTCAGCACCAACTTCTGTCACCAATTCCCCAATCCTGGATTTGGATATGTTGCTACATGAAGGGGATTTTGACACTGATTTCCCTTTCAACACCCCTGAATATTTCTCTTCATAA 1095 0.4009 MEENTKREHVSLINELIQGKELVKQLSNHLFSSSPSSHETNEFLVDKILSSYEKALTMLNCGSNVGETKTTNVNMMNSPCSFTNESPRSEVMDLEFKHKSVFKKRKTMPRWTEQVKICSETGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTIIEVTYRGRHTCTQAKHLKKEFPSKTKMGLGGNQLHNDKKNQLLVQEKIQQTPEAIFTFKAEHEVKTENLETKKDIFPWFCFQSPSIGSENEDNNILSETMMENHFIESFSPAFISPVTSDSNFLCLSAYNLGSNGLSQNVQTSESDITEIVSAPTSVTNSPILDLDMLLHEGDFDTDFPFNTPEYFSS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04229 364 ProSiteProfiles WRKY domain profile. 122 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g04229 364 Pfam WRKY DNA -binding domain 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g04229 364 FunFam WRKY transcription factor 53 113 190 - -
Rops8g04229 364 Gene3D WRKY domain 113 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g04229 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 313 IPR044810 GO:0003700
Rops8g04229 364 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g04229 364 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04229 Rops-Chr8 84866946 84869286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04229 8 252 WRKY Transcription Factor Family AT4G23810 42.545 1.35e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g04229 WRKY 2.9e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04229 - - gmx:100127387 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04229 8 84866946 84869286 Rops4g01612 4 39429490 39432104 PCT