Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04215 ATGGAAGAACCCAGGCTAAAAGAGCAGAAAATCATCACTTATAAACTTACCAAACCTGGGCTTTTGGATAAGATACCAAGGGTGGTTCGTATCTCAGTGATGGATCATTATGCCACTGATGATGATGATGAAGAAGAAGATGAAGGGTTGTGTCACTTTACTCAGGGGAAGAAGCTTGTGAACGAGATCAGAATTATTGAGAGTTCAGCTTGTTTAACAAGTAACAATGAGTCGCGTGTCCATGATAGTGATATGTCACTGAATAAGCTTGAAAGAAGAACCACAGCCACAACAACTGAAGAGGGTGTTGGAAAGAAGAGGAAGCTTCGAGGAGTTCGTCAAAGACCATGGGGACGGTGGGCAGCAGAAATCAGAGATCCTGTGCAGCGGAGAAGGGTGTGGTTGGGCACCTACGACACTGCAGAAGAAGCTGCTTTGGTTTACGACAAAGCAGCTATTCAATTTAGAGGATCTGATGCTCTCACTAATTTCATCAAGTCACCTCAGAAGGAATGTATTCGTTTTGATTACGTCTCCAAAGTAAACCATAAGAGGATTGAAAATGTGATTTGTGGCAATGATTTAGGTGATAAAGAGTCTCATGATTCACCTTCACCCATTTCTGTACTTGGCCTTCAGTCTGATCAGTTTGTGGCGGAGGTTCCTCAAATGGAGGGTCAAGAACCATGTTTGGAAGATAGCTTTTTGTTTTTAGATTCACTCTCCCTTGATTGTCTTCTGAATTTTCAAACTCCTCCTCCTCCAATATTTCACAGCGAAATGAGTATAGATCACTTTATTTCTCATGACAATTTTAGTGATATTTCCTGTTATATCAATGAGGATTTTGAATCATGGAATTGGGATATAGATAGTTATTTCAAAGACCCTCCTCCCTAG 900 0.41 MEEPRLKEQKIITYKLTKPGLLDKIPRVVRISVMDHYATDDDDEEEDEGLCHFTQGKKLVNEIRIIESSACLTSNNESRVHDSDMSLNKLERRTTATTTEEGVGKKRKLRGVRQRPWGRWAAEIRDPVQRRRVWLGTYDTAEEAALVYDKAAIQFRGSDALTNFIKSPQKECIRFDYVSKVNHKRIENVICGNDLGDKESHDSPSPISVLGLQSDQFVAEVPQMEGQEPCLEDSFLFLDSLSLDCLLNFQTPPPPIFHSEMSIDHFISHDNFSDISCYINEDFESWNWDIDSYFKDPPP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04215 299 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Rops8g04215 299 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Rops8g04215 299 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Rops8g04215 299 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Rops8g04215 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 180 - -
Rops8g04215 299 FunFam Ethylene-responsive transcription factor 2 108 166 - -
Rops8g04215 299 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Rops8g04215 299 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Rops8g04215 299 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
Rops8g04215 299 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04215 Rops-Chr8 84609354 84610253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04215 5 296 AP2-EREBP Transcription Factor Family AT4G27950 34.783 3.13e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g04215 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04215 - - ccaj:109796536 266.929