Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04182 ATGGTGGTAATGGCGAAGAGAGAAAAAGGGGATTTATTGGAATTGAAGAAGAAGTTGTGTGGATTGGTGAAGAGTATCACAGAGAGCGATGACTTTACAGTGGAAACCGCTGATGAGGCTATCGCTACTCTTTCTGCTTTGAAGGATTTAAAGTATGGAAATCAAAGGTCTTTCTCTGATAAATTGGATGACTTTGTCATTCCTCCAGAATTTCGATGCCCCATTTCTACACTGTTGATGACAGACCCTGTTATCTTGTCTACTGGACAGACTTATGATCGACCATTTATCCAGAGATGGTTGAATGAAGGACACAGAACATGCCCTCAAACCCAGCAAGTACTCTCTCACTCGATCCTTACTCCTAATTATTTGGTCCGAGACATGATTGCACGGTGGTGTAGGCAGAATGGAATTGAGCTACCAGAACCTGTTCGGGACATTGATGAGATAGTGACTGATGCAGACAGAGGTCATTTAAATTCATTGCTTCGGAAGTTGTCATTGTCTCTTTCTGATCAGAAAGAAGCTGCAAAAGAGCTTCGCCGGTTAACAAAGCGAATGCCTTCATTTCGAACCCTTTTTGGGGAGTCCAGTGATGCAATCAAACAGTTGCTCAGTCCATTATCACCTGTCACAGCTTGTACTCATCCTGATCTCCATGAGGATTTGATCACGACTGTACTAAATCTCTCAATACATGATGATAATAAAAAAGTGTTTGCAGAGGATCCCACTGTTATTTCTCTGCTTATTGATGCTTTGAAATCCGGAACCATTCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCACATTATCAGCTCTTGATTCCAACAAGCACATCATTGGAAAATCTGGAGCTATCAAACATTTGCTTGACCTTTTAGATGAGGGACATCCATTAGCCATGAAAGATGCTGCTTCAGCTATATTCAACCTATGTCTTGTGCACGAGAACAAAGGGAGAACTGTGCGAGAAGGAGCTGTTAAGGTTATTCTGAACAAGATCATGAACCACATTCTAGTTGATGAGTTGTTGGTTATTTTGGCACTCCTCTCTAGTCATCCGAAGGCTGTTGAAGAAATGGGTGATCTAGGTGTTGTTCCTTTTCTACTCGGTATTATAAGAGAGAGCACATCAGAACGAAGCAAGGAGAATTGTGTGGCAATCCTATATACAATCTGTTATAGTGATAGAACAAAGTGGAAGGAAATTAGAGAAGAAGAAAAGGCCAATGGTACACTGTCTAAACTTGCACAATGTGGAACTTCAAGGTCCAAAAGGAAGGCTAATGGTATTCTTGAGAGGCTCAATAGATCTCCCTCCTTAACCCACACTGCTTAG 1347 0.415 MVVMAKREKGDLLELKKKLCGLVKSITESDDFTVETADEAIATLSALKDLKYGNQRSFSDKLDDFVIPPEFRCPISTLLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIARWCRQNGIELPEPVRDIDEIVTDADRGHLNSLLRKLSLSLSDQKEAAKELRRLTKRMPSFRTLFGESSDAIKQLLSPLSPVTACTHPDLHEDLITTVLNLSIHDDNKKVFAEDPTVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLDLLDEGHPLAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKIMNHILVDELLVILALLSSHPKAVEEMGDLGVVPFLLGIIRESTSERSKENCVAILYTICYSDRTKWKEIREEEKANGTLSKLAQCGTSRSKRKANGILERLNRSPSLTHTA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04182 448 SMART arm_5 356 397 IPR000225 GO:0005515
Rops8g04182 448 SMART arm_5 276 316 IPR000225 GO:0005515
Rops8g04182 448 SMART arm_5 234 275 IPR000225 GO:0005515
Rops8g04182 448 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Rops8g04182 448 SUPERFAMILY RING/U-box 63 144 - -
Rops8g04182 448 Pfam Armadillo/beta-catenin-like repeat 279 315 IPR000225 GO:0005515
Rops8g04182 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 140 IPR013083 -
Rops8g04182 448 FunFam RING-type E3 ubiquitin transferase 66 140 - -
Rops8g04182 448 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
Rops8g04182 448 PANTHER U BOX DOMAIN-CONTAINING 27 438 - -
Rops8g04182 448 CDD RING-Ubox_PUB 68 120 IPR045210 -
Rops8g04182 448 FunFam RING-type E3 ubiquitin transferase 150 443 - -
Rops8g04182 448 Coils Coil 164 184 - -
Rops8g04182 448 Gene3D - 162 445 IPR011989 -
Rops8g04182 448 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Rops8g04182 448 SUPERFAMILY ARM repeat 170 438 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04182 Rops-Chr8 84293787 84296139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04182 129 448 U-box Gene Family AT3G07360 60.486 3.57e-129 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04182 - - gmx:100776534 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04182 8 84293787 84296139 Rops8g04182 8 84293787 84296139 ECH