Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04180 ATGGCATTTCCCTCGACTTTTGTTCCCTTGGTGATAACTTCTGTTATACTTTTTGGGGTCCTTGTCCCAAATGCTAATGCCAAGCCGAGGGCTTTCTTTGTGTTTGGAGACTCACTTGTTGACAGTGGCAATAACAATTACTTGGCCACTACTGCTCGGGCTGATTCCCCACCTTATGGAATTGACTATCCAACTCGCAGAGCCACTGGTCGTTTCTCCAATGGCCTTAACATTCCCGATCTTATTAGTCAACGATTAGGTGCTGAGTCAGTGTTGCCATACTTGAGTCCACGACTAAGAGGTGACAAGCTTCTAACTGGAGCCAATTTTGCTTCTGCTGGAATTGGCATTCTTAACGACACTGGAGTTCAGTTTCTGAATGTACTCAGAATGTATAGACAGTTGGACTACTTTGAAGAGTACCAACGTCGAGTGGCTTCTCGAATTGGAGTAGCAAGGACAAATACACTAGTTAATCGAGCATTGGTTCTCATCACTGTTGGTGGTAACGATTTTGTAAACAATTACTACTTGGTGCCTTATTCTGCTAGGTCTCGCCAATATTCACTACAAGAGTATGTCAAATATCTCATTATAGAGTACAGGAAACTCTTGCAGAGACTATATGATCTGGGAGCTCGCAGAGTTGTTGTGACAGGAACTGGACCATTGGGTTGTGTTCCAGCAGAATTGGCCATGCGTAGAACAAATGGGGCATGTTCTGCTGAACTTCAAAGAGCTGCAGCATTGTACAACCCTCAACTGGAACACATGATACAAGGACTCAACAAGAAAATTGGTAGTGATGTTTTCATCGCTGCAAATACAGCAGCAATGCATAACAATTTCGATTTACCACATCAAAAATTGCTTGTTGTGGGCAAGGACCCTTCAATGGAATTGGGTTGTGCACACCACTCTCTAATATCTGTAGAGGGTAAGACTGTAGGATGTACCATTCACAAAGCAATGGTTAATATAACTGACAAAGAGACGAAACTTTCAGCGTTGATAGTGGATGATGATACTACCATTCGCTTAATTCACAAGGCCATGCTTGAAGGCTTGTTTAACATAGACACAAAAATGGTTAAGGATGGAAAGGAAGCAGTGGATCTGCATTGTTCTGGGGCAAATTTTGACATAATTTTCATGGACAAAGACATGCCTATCATGGATGGTGCTGAGGCAACAAAAGAGCTACGTGCTATGGGTGTGAAGAGCATGATTGTGGGGATCACTACCCGTGCTGATGGCAAAGAAAGAGAGGAATTTCTAACAGCTGGATTGAACCGATGCTTTGAGAAGCCTCTTAGCCGTGCAATGGTTGAAGTTGTCTTACAAGAGCTTCAAAAATTTAACATTTGA 1368 0.4269 MAFPSTFVPLVITSVILFGVLVPNANAKPRAFFVFGDSLVDSGNNNYLATTARADSPPYGIDYPTRRATGRFSNGLNIPDLISQRLGAESVLPYLSPRLRGDKLLTGANFASAGIGILNDTGVQFLNVLRMYRQLDYFEEYQRRVASRIGVARTNTLVNRALVLITVGGNDFVNNYYLVPYSARSRQYSLQEYVKYLIIEYRKLLQRLYDLGARRVVVTGTGPLGCVPAELAMRRTNGACSAELQRAAALYNPQLEHMIQGLNKKIGSDVFIAANTAAMHNNFDLPHQKLLVVGKDPSMELGCAHHSLISVEGKTVGCTIHKAMVNITDKETKLSALIVDDDTTIRLIHKAMLEGLFNIDTKMVKDGKEAVDLHCSGANFDIIFMDKDMPIMDGAEATKELRAMGVKSMIVGITTRADGKEREEFLTAGLNRCFEKPLSRAMVEVVLQELQKFNI* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04180 455 Gene3D - 320 453 - -
Rops8g04180 455 Pfam Response regulator receiver domain 337 441 IPR001789 GO:0000160
Rops8g04180 455 CDD REC_hyHK_CKI1_RcsC-like 337 447 - -
Rops8g04180 455 SUPERFAMILY SGNH hydrolase 32 248 - -
Rops8g04180 455 Gene3D SGNH hydrolase 22 316 IPR036514 -
Rops8g04180 455 SUPERFAMILY CheY-like 333 451 IPR011006 -
Rops8g04180 455 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 30 283 - -
Rops8g04180 455 CDD SGNH_plant_lipase_like 31 276 IPR035669 -
Rops8g04180 455 SMART REC_2 334 446 IPR001789 GO:0000160
Rops8g04180 455 Pfam GDSL-like Lipase/Acylhydrolase 33 280 IPR001087 GO:0016788
Rops8g04180 455 ProSiteProfiles Response regulatory domain profile. 335 451 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04180 Rops-Chr8 84237837 84245613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04180 31 274 Acyl Lipid Metabolism Gene Families AT4G10950 34.263 2.22e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops8g04180 Lipase_GDSL 6.2e-20 CL0264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04180 - - gmx:100813953 467.618