Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04173 ATGTTTAAGCTTTCGAGTTCCAGGCATTGGCTATTGGCAACAAAAGCTCAAGTTAAACACTGTCTACGGCATCATCGCCATGATTCAGCTGCCTTTTCTACTAACTATGCTGCTAAAGGATATACTTCAGATCGGATATTTGCTCCTTATTCTGTTTACAAGGGCAAAGCTGCTTTCTCTTTGAGTCCCTGTCTTCCAACTTTCACCAAGTTAGATTCTGGGGCTCTCGTAGTCGATCGACGCGGTTCCATAATGATGGTTTTCATGCCTTCTATTGGGGAGCGCAAATATGACTGGGAGAAGAGACAAAAATTTGCTCTCTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTTAGGAAGAGCTTATCAATTAAGCCTCATGCCAACAGCAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACCTGTTAAATACCAAAGATCACCTCAGTGTTCCTGTCACAACTGCTGAGTTTTCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCGTCTAACTAATCAGCAGTCCAGAGGGACAGTTAGCCTTCAATCGAAGGTGGACCCACAAGCTTTAGACTTGGAATGGGAAAAGTGA 684 0.4357 MFKLSSSRHWLLATKAQVKHCLRHHRHDSAAFSTNYAAKGYTSDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMVFMPSIGERKYDWEKRQKFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANSNGYFVSLTVVNNLLNTKDHLSVPVTTAEFSVMKTACSFALPHIMGWDRLTNQQSRGTVSLQSKVDPQALDLEWEK* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04173 227 SUPERFAMILY ssDNA-binding transcriptional regulator domain 43 210 IPR009044 GO:0003677|GO:0006355
Rops8g04173 227 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 15 227 IPR013742 GO:0003697|GO:0006355|GO:0006952
Rops8g04173 227 Gene3D Transcriptional Coactivator Pc4; Chain A 36 209 IPR009044 GO:0003677|GO:0006355
Rops8g04173 227 Pfam Whirly transcription factor 52 186 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04173 Rops-Chr8 84048143 84051313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04173 31 227 Whirly Transcription Factor Family AT1G71260 65.517 5.20e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Rops8g04173 Whirly 5e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04173 K26561 - gmx:100817863 340.502