Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04171 ATGGAACCTAATGAGAACCAACTAAGTTCCTTCTTCCACCACCACCACCACCATCAGGTCCAGCAACAACCACAACAGCAGCAGCAGAACACCGCCACCTCCACCGTAGCTCCGGCGGCGAACACCACCACCGGGACGCCGACAAATGGGCTATTGTCGAACACTGATGGGTCCCACATACTGTACCCTCATTCAGTGGCATCTGCGGTGTCGTCGCAACTGGAACCGGCGAAGAGGAAGAGAGGGAGGCCAAGGAAGTATGGAACCCCAGAACAAGCTCTGGCTGCGAAGAAGGCTGCTACGTCGTCGTTTTCACACAAGAAGCCTCAGTCTCACTCTCACACCTTCTCTCCCTCTTCTTTCTCTTCTAAGAAATCCCATTCTCTCGCTCTAGGCAATGCAGGACAAGGCTTCACTCCACATGTAATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGCATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGTCAACCAGCAACCTCAGGAGGCAACATTACTTATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCCTATGTCCGCAACGAACTCGGAGGTCGATCTGGTGGTCTCAGTGTATGCTTGTCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCCCTTAAAGCTGCTGGGCCAGTTCAGGTCATAGTTGGTACATTTTTTATCGACACCAAGAAGGATACTGCTGCTGGTGCAAAAGGTGATGCCTCTGCAAGCAAGTTGCCATCACCAGTTGGTGAATCAGTATCAAGTTTAGGTTTCCGCCAAACAGTTGACTCTTCCGGTGGAAATCCAATCCGGGGAAACGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGTGACGCCTCCCCGGTCTACAGACTGGGGGGGTCATGTAGATTCAAGAAATGATGGTTTTGAGCTGACAGGAAGAGCAGTTCATGGGGGGCACCAGTCTCCGGAGAATGGGGGCTATGAGTAA 1077 0.5032 MEPNENQLSSFFHHHHHHQVQQQPQQQQQNTATSTVAPAANTTTGTPTNGLLSNTDGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATSSFSHKKPQSHSHTFSPSSFSSKKSHSLALGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGGRSGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDTKKDTAAGAKGDASASKLPSPVGESVSSLGFRQTVDSSGGNPIRGNDEHQAMGGSHFMIQQLGLHVTPPRSTDWGGHVDSRNDGFELTGRAVHGGHQSPENGGYE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04171 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 17 277 IPR039605 GO:0003680
Rops8g04171 358 MobiDBLite consensus disorder prediction 262 303 - -
Rops8g04171 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 250 IPR005175 -
Rops8g04171 358 MobiDBLite consensus disorder prediction 96 129 - -
Rops8g04171 358 MobiDBLite consensus disorder prediction 21 57 - -
Rops8g04171 358 MobiDBLite consensus disorder prediction 69 129 - -
Rops8g04171 358 MobiDBLite consensus disorder prediction 273 297 - -
Rops8g04171 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 251 - -
Rops8g04171 358 Gene3D - 140 264 - -
Rops8g04171 358 ProSiteProfiles PPC domain profile profile. 134 275 IPR005175 -
Rops8g04171 358 MobiDBLite consensus disorder prediction 334 358 - -
Rops8g04171 358 CDD DUF296 139 250 IPR005175 -
Rops8g04171 358 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04171 Rops-Chr8 84018283 84022634 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04171 34 358 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 52.210 2.45e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04171 - - gmx:100809675 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04171 8 84018283 84022634 Rops8g04171 8 84018283 84022634 ECH