Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04170 ATGGAAAGAGGGTTTCCTCCTTTGTTGTTGTTCTTGCTGTTGGTTTCTTCTTTGTTACTATCTGTTTACGGCATAGATGGGGAATATGTACAGTGCAACTGTGATGAGGATGGGCTTTGGGGCATTCAGAGCATATTGGTTTGCCAAAAAGTCAGTGACTTTTTCATTGCTATTGCTTATTTTTCCATACCCATTGAGCTCCTTTACTTTGTTAGCTACTCCAATGTCCCATTCAAATTGGTCTTCCTTCAGTTTATTGCCTTCATAGTTCTGTGTGGCTTGACCCATTTGCTCAATGCTTATACTTATTATGGGTCTCACTCCTTCCAGTTGTTTGTGTCCCTCACTGTTGCTAAATTCCTTACTGCTCTTGTTTCCTGTGCCACTGCAATTACCTTTCCCACCCTGATTCCTCTTCTGCTGAAAATCAAAGTGAGGGAGCTTTTCTTGAGGCAGAATGTGTTGGAATTGGGGCAAGAAGTTGGAATGATGAAGAAACAAAAGGAAGCGAGTTGGCATGTTAGGATGCTGACCCGTGAGATTAGGAAGTCTTTGGATAAGCATACCATATTATATACCACCCTTGTTGAGCTTTCCAAGGCCTTGGATTTGCACAATTGTGCAGTTTGGATGCCTAATGAGGACAGGCGAGTAATGCATCTGACTCATGAGTTGAAACAAAGCTCAGCAAAGAATTTTCATGATACTATTCCTATAAACGATCCGGATGTGTTAGAGATAAGAAAGAGCAAGGGGGTGTGGATTTTGAGGCCTGATTCTGCACTAGGAACTGCAAGTAGTGGTGGATCTGGTGACTCTGGTGCTGTAGCAGCCATTCGCATGCCGCTACTTCATGTTTCAAATTTCAAAGGAGGAACACCAGAGTTTGTTGAGACATCTTATGCTATACTTGTTTTGGTTCTTCCAAATTCGAACTCCAGGGCTTGGACCTCCCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTGGCTGTAGCCTTGTCTCATGCATCTGTTCTTGAAGAATCTCAGCTAATGAGCAAGAAACTTGCAGAGCAAAACCGGGCACTGCAACAGGCTCAAAAGAATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGCTTCAAGAGGATAATATAAGGTCCGAACAGAAGATTGTTATTGACGCAATGTTGAAAGTTAGCAATGCACTCTCACGTTTAATTAATGATGTAATGGAGATTTCCGCAAATGACAAAGGAAGCTTCCGGTTAGAGATGAAGCCTTTCCATCTACATTCCATGTTGAGGGAGGCTGCTTGCACTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTCAAAATTGATGTCCACAGGTCTTTGCCTGATCTGGTAATAGGTGACGAGGCACGGTCTTTTCAAGTAATTTTGCATATGGTTGGCTATTTATTGAACACATATGATAGAGGGACTCTCATTTTTCGAGTTTTTCTTGAAAGTGATAGTGGGGATAAGGATGATAAAAGTTCTGGAATATGGAGATCAAGCATGAAAAATGATTATGTATATATAAAATTTAATTTCCAGATAACTGGTATTAGTTCCTATCCAGATGAATCAAATTTAACGAGAAATTATGCTGGTAAGAGGCACTGCAACAATGAACCTAAGGAGGGCCTGAGCTTCAGCATGTGCAAAACACTGGTGCAGATGATGCAAGGTAATGTTTGGATATCACCAAACTCTCAGGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCAGATTGGATCATCACATGGAAGATATGCTCTTGCTCCTAAAGATTTATCAAACCCACAGTTTAGAGGGCTTAATGTTTTGTTAGCTGATGATGATGATGTAAACAGGACAGTGACTAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAACCGCTGTTTCATCGGGTTTCGAATGTCTGGGTGCTATAAGTGCCTCTGGTAACTCATTCAAAATTATCCTATTGGATCTTCAAATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAGTTCCAAAGCCGTAATTGGCCCTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAAAGATGCCTGCAGGTGGGGATGAATGGATTGATTCGAAAACCTATCCTCCTCCATGAGATAGCAGATGAACTTAGAACAGTCCTGTTACGTGCAGGTGAAAAATTGTGA 2286 0.4191 MERGFPPLLLFLLLVSSLLLSVYGIDGEYVQCNCDEDGLWGIQSILVCQKVSDFFIAIAYFSIPIELLYFVSYSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGSHSFQLFVSLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPNEDRRVMHLTHELKQSSAKNFHDTIPINDPDVLEIRKSKGVWILRPDSALGTASSGGSGDSGAVAAIRMPLLHVSNFKGGTPEFVETSYAILVLVLPNSNSRAWTSHEMEIVEVVADQVAVALSHASVLEESQLMSKKLAEQNRALQQAQKNAMMASQARSSFEKVMSHGMRRPMHSILGLLSMLQEDNIRSEQKIVIDAMLKVSNALSRLINDVMEISANDKGSFRLEMKPFHLHSMLREAACTAKCLCVYKGFGLKIDVHRSLPDLVIGDEARSFQVILHMVGYLLNTYDRGTLIFRVFLESDSGDKDDKSSGIWRSSMKNDYVYIKFNFQITGISSYPDESNLTRNYAGKRHCNNEPKEGLSFSMCKTLVQMMQGNVWISPNSQGLAQGMTLLLKFQIGSSHGRYALAPKDLSNPQFRGLNVLLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNSFKIILLDLQMPEMDGFEVARRIRKFQSRNWPLIIALTASAEEHIKERCLQVGMNGLIRKPILLHEIADELRTVLLRAGEKL* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04170 761 Gene3D - 343 436 - -
Rops8g04170 761 Pfam His Kinase A (phospho-acceptor) domain 372 435 IPR003661 GO:0000155|GO:0007165
Rops8g04170 761 SUPERFAMILY CheY-like 631 754 IPR011006 -
Rops8g04170 761 Gene3D - 174 342 IPR029016 -
Rops8g04170 761 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Rops8g04170 761 CDD HisKA 369 431 IPR003661 GO:0000155|GO:0007165
Rops8g04170 761 Gene3D - 635 760 - -
Rops8g04170 761 Coils Coil 341 371 - -
Rops8g04170 761 SMART REC_2 635 750 IPR001789 GO:0000160
Rops8g04170 761 FunFam Ethylene receptor 4 338 432 - -
Rops8g04170 761 Pfam Response regulator receiver domain 637 749 IPR001789 GO:0000160
Rops8g04170 761 ProSiteProfiles Response regulatory domain profile. 636 754 IPR001789 GO:0000160
Rops8g04170 761 Pfam GAF domain 188 335 IPR003018 GO:0005515
Rops8g04170 761 FunFam Ethylene receptor 633 757 - -
Rops8g04170 761 Gene3D - 437 615 IPR036890 -
Rops8g04170 761 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 29 757 - -
Rops8g04170 761 SUPERFAMILY GAF domain-like 189 338 - -
Rops8g04170 761 ProSiteProfiles Histidine kinase domain profile. 378 615 IPR005467 -
Rops8g04170 761 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 440 598 IPR036890 -
Rops8g04170 761 SMART gaf_1 186 345 IPR003018 GO:0005515
Rops8g04170 761 CDD REC_ETR-like 635 750 - -
Rops8g04170 761 CDD HATPase_ETR2_ERS2-EIN4-like 477 609 - -
Rops8g04170 761 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 356 436 IPR036097 GO:0000155|GO:0007165
Rops8g04170 761 PIRSF Ethylen_sen_hybr_HK 7 761 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04170 Rops-Chr8 84007601 84012160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04170 26 759 Miscellaneous Gene Families AT3G04580 62.918 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops8g04170 GAF 8.6e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04170 K14509 - gmx:100805023 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04170 8 84007601 84012160 Rops6g01431 6 29995288 29999744 ECH
Rops8g04170 8 84007601 84012160 Rops8g04170 8 84007601 84012160 ECH