Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04168 ATGGGGAACCGTGGTGGACTGATTCCGTTGGTCATGGAGATACCAACTGGCGTTGACATTGTTGAGAGCTTGCTTCGGTATGCGAGAAGGCGCCAGCGTGGTGTCTATGTTCTTTCTGCCACTGGCATCATCACCAGCCTCACTCTCCGTCAACCCACAGTCACCGGTGCTGTCATTGCACTTGACGGGTGGTTTCAGATAATATCCTTGACTGGTTTATTTGTGCCTAGACCGTCCTTGCTTGGCACAGGCCTAACTGTCAACCTGGCCGGACCTCAGGGACAAGTGGTAGGCGGCAGCGTTGTGGGTCCTTTGGTGGCGTCGGGAGAGGTTATGATAATGGCAGCTATGTTTTCCATTACGGATGATGAAGATCAGGGGCCAGGTGTATGA 393 0.5318 MGNRGGLIPLVMEIPTGVDIVESLLRYARRRQRGVYVLSATGIITSLTLRQPTVTGAVIALDGWFQIISLTGLFVPRPSLLGTGLTVNLAGPQGQVVGGSVVGPLVASGEVMIMAAMFSITDDEDQGPGV* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04168 130 Gene3D - 10 127 - -
Rops8g04168 130 SUPERFAMILY AF0104/ALDC/Ptd012-like 9 118 - -
Rops8g04168 130 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 119 IPR014476 GO:0003680
Rops8g04168 130 Pfam Plants and Prokaryotes Conserved (PCC) domain 9 118 IPR005175 -
Rops8g04168 130 ProSiteProfiles PPC domain profile profile. 4 130 IPR005175 -
Rops8g04168 130 CDD DUF296 9 114 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04168 Rops-Chr8 83969302 83969694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04168 11 118 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 55.046 1.85e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04168 - - qsu:112038015 125.946