Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04167 ATGGCAAATCGTGGTGGACTGATTCCGTTAATTATGGAGATAGCAACCGGAGTTGACATTGTTGAGAGTTTACTTCAGTACGCGAGAAGGCGCCAGCGTGGTGTCTATGTTCTCTCTGCCACTGGTACCATCACTAGCCTCACTCTCCGACATCCCACAGTCCCCAGCACTGTCATTGCACTTGACGGATGGTTCGAGATAATATCGTTGACAGGTTTATTTCTACCTGGACCATCCCAGGCTGGCTCCACCGGCCTAACTGTCAACCTGGCCGGAGTTCAAGGACATGTGGTCGGCGGCAGTGTTGTGGGTCCCCTCGTGGCATCAGGAGAGGCTATGATAATGGCGGCTACGTTTTCCGTTGAGGATGATGAAGATTAG 381 0.5197 MANRGGLIPLIMEIATGVDIVESLLQYARRRQRGVYVLSATGTITSLTLRHPTVPSTVIALDGWFEIISLTGLFLPGPSQAGSTGLTVNLAGVQGHVVGGSVVGPLVASGEAMIMAATFSVEDDED* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04167 126 ProSiteProfiles PPC domain profile profile. 4 126 IPR005175 -
Rops8g04167 126 SUPERFAMILY AF0104/ALDC/Ptd012-like 9 119 - -
Rops8g04167 126 CDD DUF296 9 91 IPR005175 -
Rops8g04167 126 Gene3D - 10 125 - -
Rops8g04167 126 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 120 IPR014476 GO:0003680
Rops8g04167 126 Pfam Plants and Prokaryotes Conserved (PCC) domain 9 120 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04167 Rops-Chr8 83961487 83961867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04167 11 126 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 56.452 5.78e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04167 - - zju:107412190 139.043