Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04166 ATGGCGGATTCATCGACTGTTGACAAATCTTCTTCCCCTGTGAAAGAAAACAGCAGGGAGGAGGTTGAAGAGGTGGGCCACACGAGGAGGGGTAGGGGCCGCCAACGGGGCTCCAAGAGGAAGCCCAAACCGCCGGTATTCACGATCAGGGACGGCGCAAATGCACTTCGAAGCCTTGTCATAGAGATAGCAAGCGGAGTTGACATAGCTGATAGTTTGCTTCAGTTTTCGAGAAGACGTCAAAGTGGTGTTTGTGTTCTCAGCGCCACAGGTACCGTCACCAACGTCACTCTCCAGCAACCCACTGTCCCCGGCGCGGTCATAACACTTGAGGGCCGGTTCCAGATAATATCATTGTCCGGATCATTCCTTCCCGAACCGTCCCCTCTCGACTCCACCGGCCTTACAATTTGCATGGCCGGAGCTCAAGGACAAGTTATCGGCGGTGGCGTGGTGGGTCCCCTTGTGGCATCCGGAGAGGTTATAGTAACAGCGGGGAGGAAGAAAGGTGTGAAGAGTAGTTCACCTCTTCCATGGTCGGTGAGGTACAAAGTTGCCATTGGAATTGCTGAAGTTGTTGCTTATCTGCATGGTGGAACTGAAAGATGTGTTGTTCATAGAGAAATTAAGCCCTCAAACATTCTGCTTTCTTCTAGGAAGACTTCAAAGGTGAAATGTTTTCTTGTGAATCATTTGTGGACTTATAGTTTAGTACTGTGGAAATTGCCTCATATGTCATTTGTACAAGTCATTTTGATGGTTTTTGTTATCTGGCATCTTTGTGATTTTGGATTCGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAATTGTCAAAGGAACATTTGGATATTTGGTTCCTGAGTATTTCCAACATGTGAAAGTATCAACTAACTTCTTGCGACAGAAATCTGATGCACAACTGCTGATTGTTAGGATTAGAGAAGTTGATTCTCAATCAATATAG 975 0.4667 MADSSTVDKSSSPVKENSREEVEEVGHTRRGRGRQRGSKRKPKPPVFTIRDGANALRSLVIEIASGVDIADSLLQFSRRRQSGVCVLSATGTVTNVTLQQPTVPGAVITLEGRFQIISLSGSFLPEPSPLDSTGLTICMAGAQGQVIGGGVVGPLVASGEVIVTAGRKKGVKSSSPLPWSVRYKVAIGIAEVVAYLHGGTERCVVHREIKPSNILLSSRKTSKVKCFLVNHLWTYSLVLWKLPHMSFVQVILMVFVIWHLCDFGFATWTSAPSVPFLCKIVKGTFGYLVPEYFQHVKVSTNFLRQKSDAQLLIVRIREVDSQSI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04166 324 Pfam Plants and Prokaryotes Conserved (PCC) domain 57 166 IPR005175 -
Rops8g04166 324 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 165 IPR014476 GO:0003680
Rops8g04166 324 Gene3D - 56 173 - -
Rops8g04166 324 MobiDBLite consensus disorder prediction 1 48 - -
Rops8g04166 324 SUPERFAMILY Protein kinase-like (PK-like) 175 299 IPR011009 -
Rops8g04166 324 CDD DUF296 57 142 IPR005175 -
Rops8g04166 324 SUPERFAMILY AF0104/ALDC/Ptd012-like 53 165 - -
Rops8g04166 324 Gene3D Transferase(Phosphotransferase) domain 1 174 309 - -
Rops8g04166 324 ProSiteProfiles Protein kinase domain profile. 19 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04166 324 MobiDBLite consensus disorder prediction 13 31 - -
Rops8g04166 324 ProSiteProfiles PPC domain profile profile. 53 195 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04166 Rops-Chr8 83941837 83953556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04166 28 165 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.043 4.85e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops8g04166 PCC 1.3e-24 CL0615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04166 - - ini:109147678 172.94