Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04164 ATGGCGGACCAATTGGCTGCTGACAACTCATCTTCCTCAGTTAACAAACCGAGTCTATCCGTCATCGGAGAAGAGGCTGAAAGTGTGGGCACCACCACGCGTCGGACCAGGGGCGGCCCACGGGGCTCAAAAAACAAGCCCAAACCGTCACCAAATGCACTTCGAAGTCTCGTGATGGAGATAGCAGATGGAGTTGACATTATAGATAGTTTGCTTCAGTTTGCCACAAGTCGCCAGAAAGGGGTCTATGTTCTCAGTGTCACCCGCACCGTTACCAACGTCACTCTCCGCCAACCCATCGTCCCTGGTGCCATCGTGACACTTCACGGTCGCTTTGAGATCATATCGTTGACTGGTTCGTTCCGGCCTGGACCATCCCCGCCAGGCTCCACCGGGCTAACCATTCACATGGTCGGAGCTCAGGGACTAGTCTACGGCAGCGTGGTGGGTCCTCTGGTGGCATCAGGACCTGTTATGATAATGGCGGGTACATTTTCCGTTGAGGATAATGAAAGTCAATAA 522 0.5364 MADQLAADNSSSSVNKPSLSVIGEEAESVGTTTRRTRGGPRGSKNKPKPSPNALRSLVMEIADGVDIIDSLLQFATSRQKGVYVLSVTRTVTNVTLRQPIVPGAIVTLHGRFEIISLTGSFRPGPSPPGSTGLTIHMVGAQGLVYGSVVGPLVASGPVMIMAGTFSVEDNESQ* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04164 173 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 167 IPR014476 GO:0003680
Rops8g04164 173 MobiDBLite consensus disorder prediction 1 53 - -
Rops8g04164 173 CDD DUF296 55 165 IPR005175 -
Rops8g04164 173 MobiDBLite consensus disorder prediction 1 38 - -
Rops8g04164 173 Pfam Plants and Prokaryotes Conserved (PCC) domain 56 166 IPR005175 -
Rops8g04164 173 SUPERFAMILY AF0104/ALDC/Ptd012-like 52 166 - -
Rops8g04164 173 ProSiteProfiles PPC domain profile profile. 51 173 IPR005175 -
Rops8g04164 173 Gene3D - 54 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04164 Rops-Chr8 83927193 83927714 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04164 28 166 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 57.823 3.50e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04164 - - sly:101252037 175.252