Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04163 ATGGTGGATGATCTATCATCTTTTTTTGTATCATTTGTTGACAGCTTTTCCCTAGTGAAAAAACCCGATCTGTCGAATGGCAAAGGAGAGGAGAAAGAAAACAACATCGAGGAGGTTCAAAAGGTGGGCTCCAAGAACAAGCCCAAACCACCGGTATTTGTTACCAGAGAGTGCCCAAATGCACTTCGAAGCCTCATGATGGAGAAAGAAAATGGAGTTGACATTGCTGATAGCTTGCTTCAGTTTGCTAGAAGGCGCCAGATAGGTGTATGTGTTCTCAGTGATACCGGCATTGTCCTTGACCGGTTCGCTTCTTCCATGACTGTCCTTGCCGGGGTTCACCGTCCTTACCGTTTACATGGTCGGAGCTCAGGGACAAGTGGTGTAACGACTCGTGCTCCGGATCTAACGACTGTCCCCACACACCAACACGAGTCTTTCCAGCGTGCTTATGTCCTCACTTACACGCTCCTGAGAACTTCTCAAGAGGTCACTCATCCCAGAATCCCTCTGTTTCTGGTGTGGACTCGGTTCATTCATGTCTCCCTCCGCCTAAAAGCCTGCCAGGAGCCACTCCTTGTCCATGCTCTCTTTGCACCGACGATCACTCCCTGCCCTCTTCAGCCTCGGGTGTCACAAGTGGTGGGTGGTGGAGGGAGTTCATGGGACACTACTACTGAGGACAAGCTGAAGAAACATTTCAGCAACTATGGTGATGTGTTGAGCACCTCAGTGATGCGAGAGAAAAACACTGGAAAACACAGAGGCTTTGGCTTTGTCATCTTTGCGGATCCTTCTATTCTCGACAGGGATAGGGTTCTCAAAGGCAAGCATGTTATTGATGGAAACGCTTCATTGAATTGA 864 0.4884 MVDDLSSFFVSFVDSFSLVKKPDLSNGKGEEKENNIEEVQKVGSKNKPKPPVFVTRECPNALRSLMMEKENGVDIADSLLQFARRRQIGVCVLSDTGIVLDRFASSMTVLAGVHRPYRLHGRSSGTSGVTTRAPDLTTVPTHQHESFQRAYVLTYTLLRTSQEVTHPRIPLFLVWTRFIHVSLRLKACQEPLLVHALFAPTITPCPLQPRVSQVVGGGGSSWDTTTEDKLKKHFSNYGDVLSTSVMREKNTGKHRGFGFVIFADPSILDRDRVLKGKHVIDGNASLN* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04163 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 100 IPR014476 GO:0003680
Rops8g04163 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 287 IPR000504 GO:0003723
Rops8g04163 287 SMART rrm1_1 212 287 IPR000504 GO:0003723
Rops8g04163 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 266 IPR000504 GO:0003723
Rops8g04163 287 SUPERFAMILY RNA-binding domain, RBD 224 267 IPR035979 GO:0003676
Rops8g04163 287 Gene3D - 218 285 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04163 Rops-Chr8 83916764 83918331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04163 43 101 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.712 1.36e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04163 - K14411 gmx:100811267 107.071