Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04162 ATGGTGGATGATCTATCATCTGGTGACAACTTTTCCCCAATGAAAAAACCTAATCTATCGACTGGTGGAGGAGAAGACAAAGAAAACAACAACGAGGAGGTTCAAAAGGTGAGCCCCAATAACATGCCCAAACCACCGGTATTTGTTACCAAAGAGTGCCCAAATGCACTTCGAAGCCTCGTGATGGAGATAGAAAATGGAATTGACATTGCTGATAGCTTGCTTCAGCTTGCAAGAAGGTGCCAGAGAGGTGTCTCTGTTCTCAACGATACCAGCACCGCCATGAATGTCACCCTCAGGCAACCCACTGTCACTGGTACCGTCATGGCACTTAACGGCCGGTTCAAGATAATATCCTTGATCAATTCGCTCCTTCCACGACCGTCCATGTTGGGGTTCACCAGTCTAACCGTTTACATGGCCGGAGCTCAGGGACAAGTGGTGGGAGGTGGAAGGATTTCACGGGACACCACTGAGGACAAGCTGAAGGAACACTTCAGCAACTACGGTGATGTTTTGAGAACTTCAATTATAAGGGAGAAGAACAATTGA 552 0.4746 MVDDLSSGDNFSPMKKPNLSTGGGEDKENNNEEVQKVSPNNMPKPPVFVTKECPNALRSLVMEIENGIDIADSLLQLARRCQRGVSVLNDTSTAMNVTLRQPTVTGTVMALNGRFKIISLINSLLPRPSMLGFTSLTVYMAGAQGQVVGGGRISRDTTEDKLKEHFSNYGDVLRTSIIREKNN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04162 183 SUPERFAMILY AF0104/ALDC/Ptd012-like 55 151 - -
Rops8g04162 183 CDD DUF296 58 126 IPR005175 -
Rops8g04162 183 ProSiteProfiles PPC domain profile profile. 54 183 IPR005175 -
Rops8g04162 183 Pfam Plants and Prokaryotes Conserved (PCC) domain 59 151 IPR005175 -
Rops8g04162 183 Gene3D - 57 155 - -
Rops8g04162 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 180 IPR000504 GO:0003723
Rops8g04162 183 MobiDBLite consensus disorder prediction 1 48 - -
Rops8g04162 183 SUPERFAMILY RNA-binding domain, RBD 151 182 IPR035979 GO:0003676
Rops8g04162 183 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 151 IPR014476 GO:0003680
Rops8g04162 183 Gene3D - 156 183 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04162 Rops-Chr8 83874055 83874606 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04162 41 144 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.808 4.04e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04162 - - qsu:112038015 137.502