Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04159 ATGGATTTCTCATTCTTTGTTCAAGATTCAAACTTTGAATTCCCTTCTGAGTCTTATCCATTCACATGTCCTAACCAATCACTTCCCTTCAATGAAAATGACTCCCAGGAAATGCTTCTCTGCCAAGTTCTGGCACAGGGTGGTGCAAACTCCTTTGAAGCAACAACACCAACAGCAGAAGTTTCATATAGAGGGGTCAGGAAGAGGCCGTGGGGGAAGTACGCAGCAGAGATAAGGGACTCAACGAGGAATGGTGTGAGGGTTTGGTTGGGAACTTTTGACACTGCTGAGGCTGCAGCTTTGGCTTATGACCAGGCTGCATTGGCAATGCGAGGTTCAATGGCTGTGTTGAATTTCCCAGCTGAAATGGTGCGCCAATCGCTTCAAAACATGGACTATGGTAGTTTCCAAAAGGGGTGCTCTCCAGTTTTGGAGTTAAAGAAGAGGCACTCCATCATGAGGAAATTGGAGAAAGAGAAGATCAAAAAGAAGCATGGAGAGGTCAGATTGGAGAACATGGTGGTGTTGGAGGATTTAGGGGCAGAGTATTTGGAAGAGCGTCTCACTGTGTCCCAGGATGCTTGCTTGACTAGTTACTTCTTTGCTTAG 609 0.4614 MDFSFFVQDSNFEFPSESYPFTCPNQSLPFNENDSQEMLLCQVLAQGGANSFEATTPTAEVSYRGVRKRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEMVRQSLQNMDYGSFQKGCSPVLELKKRHSIMRKLEKEKIKKKHGEVRLENMVVLEDLGAEYLEERLTVSQDACLTSYFFA* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04159 202 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Rops8g04159 202 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Rops8g04159 202 FunFam Ethylene-responsive transcription factor 2 61 122 - -
Rops8g04159 202 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Rops8g04159 202 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Rops8g04159 202 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Rops8g04159 202 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Rops8g04159 202 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Rops8g04159 202 PANTHER DNA-BINDING DOMAIN 54 189 IPR044808 GO:0003700|GO:0009873
Rops8g04159 202 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04159 Rops-Chr8 83744807 83745415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04159 28 194 AP2-EREBP Transcription Factor Family AT3G23240 52.486 1.50e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g04159 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04159 K14516 - tcc:18600104 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04159 8 83744807 83745415 Rops6g01452 6 30349772 30350664 ECH
Rops8g03092 8 68671948 68672670 Rops8g04159 8 83744807 83745415 ECH
Rops6g01242 6 27481692 27482348 Rops8g04159 8 83744807 83745415 ECH
Rops8g04159 8 83744807 83745415 Rops8g04159 8 83744807 83745415 ECH
Rops8g04159 8 83744807 83745415 Rops6g01244 6 27542841 27543497 PCT