Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04156 ATGGAGCAATCAGTTTTGGATGACATAATCAATCGTTTGCTTGAAGTTCGAAACCGTCCAGGGAAACAGGTGCAGCTATCTGAGTCAGAGATCCGCCAACTGTGCGTAGTTTCTAGAGAGATTTTCTTGCAACAACCTAATTTATTAGAGCTCGAAGCACCCATCAAGATTTGTGGTGATGTACATGGTCAATATTCAGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCCGAGGCCAACTACTTGTTTCTGGGGGATTATGTGGATCGGGGGAGGCAAAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAAATAAAATATCCTGAAAACTTTTTCCTGTTGAGGGGGAACCATGAATGCGCTTCTATAAACCGGATATATGGATTTTATGACGAGTGCAAGAGAAGGTTCAATATTAGAAATCTACAGCGGCCCACTGATGTTCCTGATACCGGTTTGCTTTGTGATCTTCTTTGGTCTGACCCAAGCAAGGATGTTCAGGGATGGGGAATGAATGACAGGGGAGTGTCATACACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATCTAATTTGTCGTGCTCATCAGGTTGTGGAGGATGGATACGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCTGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCCATGATGAGTGTTGATGAGACCCTAATGTGCTCATTCCAAATACTAAAGCCAGCTGATAAAAAAGTAAGGTTCAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCTCCAGCAGGTGTCAAGTCCTTCCTGGGTGCAAAAGTATGA 861 0.4228 MEQSVLDDIINRLLEVRNRPGKQVQLSESEIRQLCVVSREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGRQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKVRFNFGSTTTAKPGNSPAGVKSFLGAKV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04156 286 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Rops8g04156 286 PRINTS Serine/threonine phosphatase family signature 218 234 IPR006186 GO:0016787
Rops8g04156 286 PRINTS Serine/threonine phosphatase family signature 196 216 IPR006186 GO:0016787
Rops8g04156 286 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Rops8g04156 286 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Rops8g04156 286 Pfam Calcineurin-like phosphoesterase 54 140 IPR004843 GO:0016787
Rops8g04156 286 Pfam Calcineurin-like phosphoesterase 141 206 IPR004843 GO:0016787
Rops8g04156 286 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Rops8g04156 286 FunFam Protein CBR-PPH-1 123 263 - -
Rops8g04156 286 SMART pp2a_7 26 256 IPR006186 GO:0016787
Rops8g04156 286 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 142 - -
Rops8g04156 286 Gene3D - 1 140 IPR029052 -
Rops8g04156 286 Gene3D - 141 265 IPR029052 -
Rops8g04156 286 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Rops8g04156 286 SUPERFAMILY Metallo-dependent phosphatases 16 260 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04156 Rops-Chr8 83701050 83709881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04156 33 140 Calmodulin-binding Proteins AT5G63870 35.965 2.14e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04156 K06269 - gmx:100816262 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04156 8 83701050 83709881 Rops6g01460 6 30563142 30568334 ECH
Rops8g04156 8 83701050 83709881 Rops8g04156 8 83701050 83709881 ECH