Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04148 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAAAACACCGAAGATGAAATCCTCAAAGCAGCTGTTATGAAATATGGTAAAAACCAATGGGCTCGGATCTCTTCTCTCCTTGTTCGCAAATCTGCCAAACAGTGCAAAGCTCGATGGTATGAGTGGCTCGACCCTTCCATTAAAAAGACTGAGTGGACTAGAGAAGAGGATGAGAAACTACTTCATCTTGCTAAGCTTATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGCCGTACACCTTCACAGTGTCTTGAACGTTATGAGAAACTCCTTGATGCTGCTTGTGTTAAGGATGATAATTATGAACCTGGTGATGACCCTCGCAAATTGCGTCCTGGTGAGATTGATCCTAATCCTGAATCAAAGCCTGCACGCCCTGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCCGAAGCACGGGCTCGGCTAGCCAACACCAAAGGGAAGAAGGCGAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCTAGGAGGCTTGCTTCTTTGCAAAAGAAGAGGGAATTGAAGGCTGCTGGAATTGATATCAGGCAGAGGAGGAGGAAAAGAAAAGGGATTGACTATAATGCTGAGATTCCCTTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTTGCTGATGAGGATAGACCGGTGGAACAGCCCAAGTTCCCTACTACTATTGAAGAACTTGAGGGGAAAAGAAGGATCGATGCTGAAGCGCAGCTAAGAAAGCAAGACGTTGCAAAGAATAAAATTGCACAAAGGCAAGATGCCCCGTCTGCTATTCTGCATGCCAACAAGATGAATGACCCGGAAACGGTTAGGAAGAGATCGAAACTGATGCTTCCACCACCCCAGATTTCGGATCATGAGTTGGATGAAATTGCAAAGTTGGGTTATGCCAGTGACCTTGCGGGCAGTGAGGAACTCGCAGAAGGTAGTAGTGCTACGCGTGCTCTTCTAGCTAACTATGCACAGACACCAGGTCAAGGAATGACTCCTTTAAGAACACCTCAGAGAACACCGGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGAGAACCCAGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAGGGAAATTCAGACTCCAAACCACATGCTGACTCCCTCTGCTACTCCTGGAGGTGCAGCAGGCCTTACTCCAAGAAGTGGCATGACACCGGCAAGGGATGGTTTTGCTTTAAGCATGACTCCGAAGGGAACTCCTCTAAGGGATGAGCTACGCATTAATGAAGACATGGATATGCATGACAGTGCTAAACTTGAGCAACAGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCTGGCTTAAGTAGCCTTCCACAGCCCAGAAATGAGTACCAGATAGCGATGCAACCCGTTCCAGAAGATGCTGAAGAACCTGAGGTGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAGAAGGCAGAAGAGGAGGCCAGACAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGGACTTCCAAGGCCTCCTGCTGCATCTTTGGAGCTTATTAGAAACTCCTTGATAAGAGCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGTTGATAAGAAAGGAGCTTCTAACCTTAATGGAGCATGATAATGCTAAGTATCCGCTTGATGAGATAGTCAATAAGGAGAGAAAAAAAGGAGCCAAGCGTGTAGCAAATGGGCCTGCTGTCCCTGTGATAGAAGATTTTCAAGATGATGAGATAAAAGATGCTGATCAGTTGATTAAGGATGAAGCCCGGTATCTTCGTGTGGCAATGGGGCATGAAAGTGATTCCCTTGATGAATTTGTTGATGCACATACAACTTGCATTAATGATTTAATGTACTTTGCCACCCGTAATGCCTATGGTCTATCAAGCGTTGCTGGAAACATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGGAGCAAGTTGGATGATGGTAAGGAGAAGATGGTACGCCTTGAGAAGAAGGTTACAGTACTCACACAAGGTTACGAGCAAAAACGTTTCTGCTGGAAACGAAACACGATCCAGCCCTCCTCAGCCCTCTTCTTCTCTCCCCCAAGCAGCGAAATCTCCGTTTGGCTCTTCAAGGACCACCGCCGGCGCCGTCTGTTGCTCGCTGGAGCTTCGTGGTTCACTTCCGGTGACTTTTCAGTGGTTGGGTTGCTTCGTGGTTCTTCTCCGGCGGCTGTTTCTTCTTCTTCTCCGGCCAGATCTCCTTCTCCTCCGGCCAACTCTCCTTCTTCCTCAGCTGTTTCTTCTTCTTCTCCGGCCAGATTTGAAATGGCTGATTCTTCCCATATTCAGAGCCAAAACACCCCCACTTCAGCCTCTAGAAGTGGGTTATTGAGCCACAAGGGGATGAGGGCAAAAAAAAGTCTTTGGCCACAAATCGAGGCCACTTTCAAGCAGATGGACATAGCTGCAACAGAAGCGGAGTGTTTTCAAGCTTTACAAAAGCAGGAGCAATTAGCAGCATCACATAGGATAAACAATATTTGGACTGAAGTACAGAAGCAAAAGGAGCTTGAGAGAAGTTTACAAAAGAGGTATGGGGATCTTATGGCAGAGCTGGAAAGGATACAAAATGTCATGGACCAGTTCAGGGTACAAGCACAACAGCAAGAAGAAATTGAAGCAAAGAATCGTGCACTTGAGCTTACTGAAGCCACAGCTGATGAAATTAATGTGCAGGGTACAGAGAATTGTGAAGCTGTATCCCTCTCAGTTGACCATGTAAGTGCTATATCTGTTGGTCCATCTCATGATCGAACTGCTGACGAGCAAGTAGACATTGTGCAAGATCAGGCCACTTCTAGCTCCAAAAATGATATGAATGTGGATTCTTGTAAAGAGCAAATGACGCTCAATGATGATGTTAAATTGCCAGATGCACCTGCTGCAGAGGATGACAGTGCAAAAGTGGGAGAAGGTAAAAACACTGATAGTTCTATTGACAACAGAGAGACCACACTAGATATGAGTGCTGCAGTGGAAATAAGCAGTGTTGAGGGAAAAGGGGAGGATCGAGATGTTGAGAATCCAGATAAGATTGTGGAAGCTGTAAACCAACCTGATACAAGAGAAACCACTCCTCTTGATGAGGGGGATCACATGCAAGTTGCTGATGGTAAAGGAGAGGAGGTAAATTAG 3336 0.4586 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRIDAEAQLRKQDVAKNKIAQRQDAPSAILHANKMNDPETVRKRSKLMLPPPQISDHELDEIAKLGYASDLAGSEELAEGSSATRALLANYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNHMLTPSATPGGAAGLTPRSGMTPARDGFALSMTPKGTPLRDELRINEDMDMHDSAKLEQQRQADMRRSLRSGLSSLPQPRNEYQIAMQPVPEDAEEPEVKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRGLPRPPAASLELIRNSLIRADGDKSSFVPPTSIEQADELIRKELLTLMEHDNAKYPLDEIVNKERKKGAKRVANGPAVPVIEDFQDDEIKDADQLIKDEARYLRVAMGHESDSLDEFVDAHTTCINDLMYFATRNAYGLSSVAGNMEKLAALQNEFENVRSKLDDGKEKMVRLEKKVTVLTQGYEQKRFCWKRNTIQPSSALFFSPPSSEISVWLFKDHRRRRLLLAGASWFTSGDFSVVGLLRGSSPAAVSSSSPARSPSPPANSPSSSAVSSSSPARFEMADSSHIQSQNTPTSASRSGLLSHKGMRAKKSLWPQIEATFKQMDIAATEAECFQALQKQEQLAASHRINNIWTEVQKQKELERSLQKRYGDLMAELERIQNVMDQFRVQAQQQEEIEAKNRALELTEATADEINVQGTENCEAVSLSVDHVSAISVGPSHDRTADEQVDIVQDQATSSSKNDMNVDSCKEQMTLNDDVKLPDAPAAEDDSAKVGEGKNTDSSIDNRETTLDMSAAVEISSVEGKGEDRDVENPDKIVEAVNQPDTRETTPLDEGDHMQVADGKGEEVN* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04148 1111 Gene3D - 59 114 - -
Rops8g04148 1111 Gene3D - 5 58 - -
Rops8g04148 1111 Coils Coil 919 952 - -
Rops8g04148 1111 FunFam CDC5 cell division cycle 5-like 5 59 - -
Rops8g04148 1111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 1018 1047 - -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 1018 1111 - -
Rops8g04148 1111 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Rops8g04148 1111 Coils Coil 167 187 - -
Rops8g04148 1111 SMART sant 58 105 IPR001005 -
Rops8g04148 1111 SMART sant 6 55 IPR001005 -
Rops8g04148 1111 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 846 926 IPR047242 GO:0000398|GO:0000974
Rops8g04148 1111 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 791 844 - -
Rops8g04148 1111 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Rops8g04148 1111 FunFam CDC5 cell division cycle 5-like 60 120 - -
Rops8g04148 1111 Coils Coil 690 717 - -
Rops8g04148 1111 CDD SANT_CDC5_II 55 106 IPR047240 -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 399 413 - -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 791 843 - -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 1064 1078 - -
Rops8g04148 1111 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 110 150 - -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 1091 1111 - -
Rops8g04148 1111 Pfam Myb-like DNA-binding domain 10 70 - -
Rops8g04148 1111 CDD SANT 10 53 IPR001005 -
Rops8g04148 1111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Rops8g04148 1111 MobiDBLite consensus disorder prediction 377 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04148 Rops-Chr8 83492069 83502897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04148 850 958 MYB-Related Transcription Factor Family AT1G09770 45.455 2.07e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g04148 Myb_Cef 8.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04148 K12860 - gmx:100790369 1284.63