Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04146 ATGGCGAAGACCCCTTGTTGTGAGAGGATGGGAATGAAGAAGGGACCATGGACTGCAGAAGAAGATCACATATTGATTTCTCATATTCAAAGATATGGCCATGGAAATTGGCGTGCACTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTCGGCTTCGTTGGATAAATTATTTGAGGCCAGATATCAAACGAGGGAAATTCAGCCAGGAAGAAGAAGATACCATCCTAAAGCTCCATGAAATTCTTGGAAATAGATGGTCTGCTATTGCGGCAAGATTACCAGGAAGAACAGACAATGAAATTAAGAATTTTTGGCATACCCATTTGAAGAAGAGGGTCCAGAAAAGTGAAGTGCAACATGCCAATACCTCCTCACATACCTTGCAAGAGCCACAAGCAGATAGTTTGGTGGATGCATCAAATGCTGATTCTAGTGTCGGTGGAAAAGTATTGATTGCCAGTTATGGTTCACCCTCTGAGAAGAATCAAGGATTTTACAGTGCATTTGATACTTCAGGGGAAACCATTGGCAATCATGGCTCTAGTCAGATCAGTGAAGAAATGGAATTTTGGTATAACATATACATCAAAACAGGGCTGCCATAA 615 0.4163 MAKTPCCERMGMKKGPWTAEEDHILISHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSQEEEDTILKLHEILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRVQKSEVQHANTSSHTLQEPQADSLVDASNADSSVGGKVLIASYGSPSEKNQGFYSAFDTSGETIGNHGSSQISEEMEFWYNIYIKTGLP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04146 204 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 159 - -
Rops8g04146 204 CDD SANT 69 112 IPR001005 -
Rops8g04146 204 FunFam MYB transcription factor 69 140 - -
Rops8g04146 204 MobiDBLite consensus disorder prediction 121 144 - -
Rops8g04146 204 CDD SANT 16 61 IPR001005 -
Rops8g04146 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g04146 204 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Rops8g04146 204 SMART sant 13 63 IPR001005 -
Rops8g04146 204 SMART sant 66 114 IPR001005 -
Rops8g04146 204 Gene3D - 68 139 - -
Rops8g04146 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g04146 204 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops8g04146 204 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g04146 204 Gene3D - 13 66 - -
Rops8g04146 204 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops8g04146 204 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g04146 204 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04146 Rops-Chr8 83477453 83478402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04146 1 198 MYB Transcription Factor Family AT2G31180 47.436 3.59e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g04146 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04146 K09422 - gmx:102663040 316.62