Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04140 ATGTCTTCATCATTACCTGTTCTTCCTACTCCCATGGAAAACAAGTATATGAAACCCCCAGATTCTTTTCAGGTTTCACCTGTCAGAGATCTGACTGCAAATTCAATCAGAAGTGCTGGACAGATGTTTCCATTCCCTGCTGAATGTCCTGGTGACATCCCCTTTTCCTCTGTTTCACAGCATGGTAGGCAATACCAAGATTCTCCCTTCGTTTCTCAGACATTAGGCGACAATGTGTCTTCTGAAATACCTTCAGCAGCATTCATTTCTGACCCACAAGAAAATGATGATATTTCCTGGGGACCAGATCCATTTCAGGATATTCTTAGTTTTCCTGAAAATGTTCCTGTCCAGCATGATCAGGTGGAAAACAGTTCTTGTTACATGAATGATGATAATGTCAAAAAATCTGATTTTGGGGAGTGGGTTGATCACTTAATGTCAATTGATGATTCTCTTCACCCGAATTGGAGTCAGCTTCTTGGTGATGACAATGCAGCAGAACCAAAACCAAAGGCGACCCAGGTTTCACAGCAGCAGCATATACCATCTGGAGAAGTTAATGGTCTTTGTAATTCAGCATCAACTGCACCGCAAACTAAGTCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTCGAGGCAGTTAACCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAATCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTAAAAAGCCACCTACAGAAGTATAGAACTGCCAGATATAAACCCGAGTTATCAGAAGGAACTTCTTCTGAGGAAAAGATGACTTCAATCCAAGAAATGAAATCTCTGGACTTGAAAACGAGTAAGGGAATCACTGAAGCATTACGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTGCAAATTCAAATTGAAGAGCAAGGGAAACACCTTCAGATGATGTTTGAGAAACAAAGAGAGATGGGCGACAGCAAAGCCAAGAGCTCCTCCTCCCCTTTGGACGCCCCTTCTGCAGCACTATCAGACACAGCACTACCTTCTCCTGTAGATAATTTAGAAACTTCAAATGAAGAACATGACAAATTAAGAAGCAATAGTAGCATACCAAAAGCCGTGCCTGAACAAAGTTCACAGGATGCAAGCACCACAAAGCAAATGGTAGGTGAAGCTGAAGATACCAAAGAAAATGAGGTGGTAGATGATCAGTTTGCTGCACCACCCACAAAACGGGTGAAGAGTTGA 1281 0.4262 MSSSLPVLPTPMENKYMKPPDSFQVSPVRDLTANSIRSAGQMFPFPAECPGDIPFSSVSQHGRQYQDSPFVSQTLGDNVSSEIPSAAFISDPQENDDISWGPDPFQDILSFPENVPVQHDQVENSSCYMNDDNVKKSDFGEWVDHLMSIDDSLHPNWSQLLGDDNAAEPKPKATQVSQQQHIPSGEVNGLCNSASTAPQTKSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPELSEGTSSEEKMTSIQEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRNLQIQIEEQGKHLQMMFEKQREMGDSKAKSSSSPLDAPSAALSDTALPSPVDNLETSNEEHDKLRSNSSIPKAVPEQSSQDASTTKQMVGEAEDTKENEVVDDQFAAPPTKRVKS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04140 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 175 396 IPR044848 GO:0003700
Rops8g04140 426 Coils Coil 290 310 - -
Rops8g04140 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Rops8g04140 426 Pfam Myb-like DNA-binding domain 203 254 IPR001005 -
Rops8g04140 426 MobiDBLite consensus disorder prediction 330 426 - -
Rops8g04140 426 MobiDBLite consensus disorder prediction 381 400 - -
Rops8g04140 426 Gene3D - 200 259 - -
Rops8g04140 426 Pfam MYB-CC type transfactor, LHEQLE motif 289 333 IPR025756 -
Rops8g04140 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 255 IPR006447 GO:0003677
Rops8g04140 426 FunFam Myb family transcription factor 200 258 - -
Rops8g04140 426 MobiDBLite consensus disorder prediction 181 201 - -
Rops8g04140 426 MobiDBLite consensus disorder prediction 1 23 - -
Rops8g04140 426 SUPERFAMILY Homeodomain-like 199 255 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04140 Rops-Chr8 83405250 83409908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04140 36 361 G2-like Transcription Factor Family AT3G04450 45.322 7.45e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g04140 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04140 - - gmx:100803267 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04140 8 83405250 83409908 Rops8g04140 8 83405250 83409908 ECH