Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04137 ATGGCTCCCAATCCCAGAGTTATTAAGGCCTTTAGCTTTATGAGGACCTTGGGAATTTCTAGTGAGGAGGTGAAGCCGGTGTTGAAAGAGTTGTTTAGAGTTTATAATGGAAACTGGGAACTTATTGAAGATGACAATTATCGAACACTCGTAGATGCATACTTTGAGTTTATGGAAGATAAGGGAGCCAAAGATAAGAGAAAAGCTCCTTTCAATGGTCATGGTGGTGAAAGACCAGTACAGAAACTGCACTTAGTGGAAGAAGATGACCAGGTTATATCAAACATGGACAACTCAAGCCAAATGTTACATGCACAAAACAATAAAATACCACCAAAGACTTTTCAACAGGAAATTATCGAGCCATCTCAAACTTCCATGGAAGATATTAAGCCCACAACCACTTCACAAGCATCACATTCAACATTGAGTGAGGTAGAAAAGATCTCCAATTTGGCAGCTAAAGTTCAAAAATCATATCCTGAGAAGGCATCATCTGCAGGACATTATTATCTTTCTGAGAAAGAGCTTGTACAGCCAAGAACTAAGAAACCTAAGTTACAATTTCCACCTATTTCAACAAATTATAATGGTTTGTCTAAGGCTTCAAATGGAAATCATTGTGTGAATTCTCTGTCAATTAAGGATCAGAATATGCAAGAAAGTAAAGATGCTAGATCAGAATGCAGCAATAATACCAAAACTTGTAAGGGAGATATTACAATTGCTTCCTCACCTCAGGGAGAAGTTAAAATATCTTTAAATTGTGACTCTGCCCTGGGACAACCAAACTTCTTTATCCCTAATTTGGATGTTGTTATGAAGTTCGTGGAGGATAAGTGCCTTAGCTCTTGCAAGACTCTTGGGCCTCCCCAAGTTTCTATGCTGGAACTATTAGATGATTTATGCATGAGTTATCTGATGTTGGGATATAGAAAGGCATCAAATTCCAAGCATGGCAATTCACACAACTTGGCATGTCTGCCACAGCAACATGTTTCTCAAGATGAAAGGAATTCTTTTCATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATTTCGTTAGTAGATGAAACTGGCAATGAGGAATTGCCAAAGTTTAATTACATACCACATAATGTAATATATCAAAGTGCTAACGTAAATTTTTCATTGGCTCGGATTGCGGATGAGGGTTGTTGTTCTAATTGTTCAGGGGACTGTCTTTCCTCTTCATTGCCTTGTGCATGTGCTCAGGAAACTGGTGGAGAGTTTGCTTACACACCACAAGGTTTGTTGAAAGATCAATTTCTAACAGCTTGTATGTCTATGAAGAATGAACCTCAAGATCATCAATATGTGTACTGTCAAGAGTGCCAATTGGAGAAGGCCAAGAATGAGTACATGCCCGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATAAAGGAATGTTGGAGGAAATGTGGATGTAACATGCATTGTGGAAATCGGATAGTGCAAAGAGGTATAAGATGCAAATTGCAGGTGTTCTTAACTCCTGAAGGTAAAGGCTGGGGCCTTCGAACACTTGAAGATTTGCCAAGGGGAACTTTTGTATGTGAATATGCTGGAGAAATATTAACCAATACAGAGTTGTACGAAAGGGTTGTGATGAATAGTAGCAATGATAGGCATACGTATCCTGTAACTCTTGATGCAGACTGGGGCTCAGAAGGGGTGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATACAATGGAAATGTTGGAAGGTTCATCAATCATAGATGCTCTGATGCAAATCTTATAGACATTCCTGTTGAAGTGGAGACTCCTGATCACCACTATTATCATCTTGCATTCTTTACCAACAGAAAAGTAAGTGCATATGAGGAGTTGACATGGGATTATGGTATTGATTTTGATGATCATGACCATCCTATTGAAGCATTTCGATGTTGTTGTGGAAGTGCGTTCTGCTGCGATAAGAAACAAAAAGGATACTTGGGATTTTATTTGTCTCCAATGTTCCGTTTGGGAATGGCGCTAATGGGTTGCAGAGTTGGGGTTTGGTGCTCGCGGGTTTGTGCATTTGGTCAGGCAAAAACTTTTGGCCAGTGGTTTCTACAAGTAACTTCTTTGGATATTGGTTTTGTCTCGAAGTGTGGGGTGTTCTTTGGCTGGTAA 2181 0.3943 MAPNPRVIKAFSFMRTLGISSEEVKPVLKELFRVYNGNWELIEDDNYRTLVDAYFEFMEDKGAKDKRKAPFNGHGGERPVQKLHLVEEDDQVISNMDNSSQMLHAQNNKIPPKTFQQEIIEPSQTSMEDIKPTTTSQASHSTLSEVEKISNLAAKVQKSYPEKASSAGHYYLSEKELVQPRTKKPKLQFPPISTNYNGLSKASNGNHCVNSLSIKDQNMQESKDARSECSNNTKTCKGDITIASSPQGEVKISLNCDSALGQPNFFIPNLDVVMKFVEDKCLSSCKTLGPPQVSMLELLDDLCMSYLMLGYRKASNSKHGNSHNLACLPQQHVSQDERNSFHFISDITKGSEKVKISLVDETGNEELPKFNYIPHNVIYQSANVNFSLARIADEGCCSNCSGDCLSSSLPCACAQETGGEFAYTPQGLLKDQFLTACMSMKNEPQDHQYVYCQECQLEKAKNEYMPEPCKGHLVRKFIKECWRKCGCNMHCGNRIVQRGIRCKLQVFLTPEGKGWGLRTLEDLPRGTFVCEYAGEILTNTELYERVVMNSSNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVGRFINHRCSDANLIDIPVEVETPDHHYYHLAFFTNRKVSAYEELTWDYGIDFDDHDHPIEAFRCCCGSAFCCDKKQKGYLGFYLSPMFRLGMALMGCRVGVWCSRVCAFGQAKTFGQWFLQVTSLDIGFVSKCGVFFGW* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04137 726 SMART preset_2 344 486 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g04137 726 Gene3D - 1 60 IPR043017 -
Rops8g04137 726 FunFam SET-domain containing protein lysine methyltransferase family protein 347 661 - -
Rops8g04137 726 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 665 - -
Rops8g04137 726 SUPERFAMILY SET domain 354 658 IPR046341 -
Rops8g04137 726 SMART set_7 502 642 IPR001214 GO:0005515
Rops8g04137 726 Pfam SET domain 514 636 IPR001214 GO:0005515
Rops8g04137 726 ProSiteProfiles Pre-SET domain profile. 396 499 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g04137 726 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 698 IPR025776 -
Rops8g04137 726 ProSiteProfiles SET domain profile. 502 636 IPR001214 GO:0005515
Rops8g04137 726 CDD SET_SETDB-like 368 636 - -
Rops8g04137 726 Gene3D SET domain 325 646 IPR046341 -
Rops8g04137 726 Pfam Ubiquitin-binding WIYLD domain 6 56 IPR018848 -
Rops8g04137 726 Pfam Pre-SET motif 347 494 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04137 Rops-Chr8 83389765 83395290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04137 409 636 C2H2 Transcription Factor Family AT2G23740 35.685 5.67e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops8g04137 Pre-SET 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04137 - - gsj:114402909 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04137 8 83389765 83395290 Rops6g01191 6 26716238 26723257 PCT