Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04131 ATGGCGCGAAAGGAAAGGGAGGAAGAAGAAGAAGAAGAAGAAGAAGGTGGCGAAGTTACAGGGCGTGTTGAACAATTTACTCGTATTTATGAAGATACTGCTCAAAACCTCCTAAACTTTTCGATTTACAGCTCAACGATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGATCCAGAGGTATCTTGGATTGATGGACAGGTATCCAAAATCAATGGACAGGATGCTGAAATTGAAACTACCAATGGAAAGAAGGTTGTCGCAAAGTTATCAAAAATATTTCCCAAAGATATGGAAGCTCCTGCTGGTGGAGTGGATGATATGACCAAGTTGTCCTATTTGCATGAGCCTGGAGTCCTGCAGAACTTAAAAATTAGATATGAGTTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAAACTACCTCATATTTATAATGCACACATGATGCAACAATATAAGGGAGCACCATTTGGAGAGTTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGGTTAACGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGTGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGTGGTAGGGCTGCCACTGAAGGACGAACAGTTGAACAACAAGTTCTAGAATCAAATCCAGTTCTGGAAGCATTTGGTAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGGAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCTGCCATTCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAACGCAACTATCATTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGACATCCTAAAACATTTCATTACCTTAACCAGTCAAAATGCTTTGAACTGGCTGATGTAAGTGATTCTCGTGAGTATCTTGCCACTAGGAGAGCTATGGATATTGTTGGAATAAGCCCAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTGCGATTCTTCATATTGGTAATCTTGAGTTTGGCAAAGGAAAGGAAATTGATTCATCAATTCCAAAAGATGATAAAGCCAAATTCCACTTAAAAACAACTGCTGAGCTCCTCATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGGAGCCTTGACCCCCAAAGTGCAGCAGTCAGCAGAGATGGCTTGGCAAAAACAATTTATTCAAGGCTGTTTGACTGGTTGGTGGACAAGATTAATAATTCAATTGGACAAGATTCCAATTCTAAATCTTTGATCGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAGGAATATACGAAGGAGCAGATCGATTGGAGCTACATTGAATTTGTTGACAATCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATCATTGCTCTCCTTGATGAAGCTTGCATGTTTCCGAAGTCAACACATGAAACATTTTCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAGATTTCACTATTTCTCATTATGCTGGCGAGGTGCTGTACCAATCTGACCAATTTTTAGATAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATCTATTGAGTGCTTCCAAATGTCCTTTTGTATCAGGCCTCTTTCCTCCACTTCCAGAAGAGACATCAAAATCTTCAAAGTTTTCTTCAATTGGTTCTCGTTTTAAGCTGCAACTACAGAGCCTAATGGAAACACTAAACTCAACGGAGCCTCATTACATTAGATGTGTAAAACCAAACAACCTCCTCAAGCCTGCAATATTTGAGAATGTCAATGTTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAGTTTATAAACCGATTTTCCCTCCTTGCCCCAGAGGTCACAGAAGCAAACGCTGATGAGAAGACTGTTTGCCAAAAGATTCTAGAAAAGATGGGGCTTAAAGGATATCAGATCGGAAAAACAAAAGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAGTACTAAGTACTGCAGCAAAAACTATCCAACGGCGTATACGAACCCATCAAGCTCGTAATCATTATCTTGCGTTACAAAAGAAGACCATATACGTGCAGTCTCTGTGGAGAGGAAGACTTGCATGCAAACTTTATCAGCACATGAGAAGGGAGGCTGCTGCTGTGAAAATTCAAAAGAACACACGCAGATATGAAGCTAGGAAAGCCTATACTAAACTCCAAGCATCAGTACTTACTTTGCAAACATCTTTGAGGGCAATCGCTGCCCTTAAGGAGTACAGTTTTAGGAAGAAGACTAAAGCTGCCATCATTATTCAGACTCGTTGGAGGTGCCACAAAGCTTCTTCATATTATAAGAGGCTGAAGAAAGGTACAATAGTGACACAATGCCGATGGAGGGGACGTGTTGGCAGGAGAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGTGCACTTAAAGAAGCAAAGGACAAGCTTGAAAAACGAGTGGAGGAGCTCACTTGGCGTCTCCAACTAGAAAAAAGTTTAAGGACCAACCTAGAAGAATCCAAATCACAAGAGATAGCAAAACTGCAGAATTCACTGCAGGAGATGCAGAGCAAAGTTGATGAAACCAATGCTATGCTTGTAAAGGAACGAGAGAATGCAAAAAAAGCTATTGAGGAAGCACCTCCTGTTGTTCAAGAAACTCAGGTTATTGTTGAAGACACACAGAAGATTGAATCACTAACGGTGGAAGTTGAGACCCTAAAGACTTCACTAGAGTCAGAGAAACAGAAAGCTGATGATTCTGAAAGCAAATATAATGAAGCCCAAGCTTGTAGTGAAGAAAGAAGTAAAAAATTAGAAGACACAGAGAAGAAGGTTCGTCAGCTCCAAGAATCATTGACCAGGCTAGAAGAGAAGATTACTAATTTAGAATCGGAGAATCAGGTTCTACGTCAACAAGCTTTGTCCATGGCACCTAGTAAGTTCCTCTCAGGACGCTCCAGATCAACTATTCAGAGAGCTGACAGTGGACATATTGGAGTGGAAGCAAAGACACCTTTGGATATGCATAGCCCATCAATGAACCACAGGGAATCCTCTGAGGTGGAGGATAAACCACAGAAGTCACTGAATGAGAAACAACAGGAGAACCAAGAGTTACTCATTAGATGTATCGCACAACATCTGGGCTTTGCTGGGAATAGACCAATAGCTGCCTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGCACTAGCATTTTTGATCGCATAATCCAAACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATGTATTAGCTTATTGGTTGTCCAATGCCTCTACACTTCTCTTGTTGCTCCAGCGCACTCTTAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAACGACGTCGTTCTTCCTCAGCAACCCTGTTTGGGAGGATGACACAAAGTTTCCGTGGAACTCCAGCAGGAGTCAATCTTTCCCAAATCAATGGTAGCATGAGCGGTGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCGGCTCTGCTTTTCAAACAGCAGCTCACAGCTTATGTGGAAAAGATATATGGAATGATTCGGGATAACTTGAAAAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCAAGAACATCCAGAGCGAGCTTGGTTAAGGGAGCATCACGTTCAGTGGCAAGCACTGAAGCCCAGAAAGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGCAACTTCTTGAATACTTTGAAAGCAAATCACGTTCCCCCATTTTTGGTCCGTAAGGTGTTCACTCAAATTTTTTCTTTCATCAATGTCCAACTTTTTAATAGTCTTCTTTTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTGAAAGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAAACATATTAGACAGGCTATTGGATTTCTGGTTATACATCAGAAACCAAAGAAAACGCTGGATGAAATAAGTCATGATCTGTGCCCAGTCCTCAGTATCCAGCAGCTATATCGAATTAGCACCATGTACTGGGATGACAAGTATGGCACACATAGCGTGTCCCCTGATGTCATATCCAATATGCGAGTGTTGATGACTGAAGATTCGAATAATGCAGTTAGTAATTCTTTCCTATTGGATGACGATTCCAGCATTCCGTTTTCTGTTGATGACATATCAAAGTCAAAGGAACAGATAGATATCTTTGATATAGAGCCCCCACCACTAATTCGTGAGAACATTGGCTTTAGTTTCTTGTTGCCACGCTCAGACTGA 4728 0.4101 MARKEREEEEEEEEEGGEVTGRVEQFTRIYEDTAQNLLNFSIYSSTMGTPVNIIVGSHVWIEDPEVSWIDGQVSKINGQDAEIETTNGKKVVAKLSKIFPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQKLPHIYNAHMMQQYKGAPFGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGHPKTFHYLNQSKCFELADVSDSREYLATRRAMDIVGISPKEQEAIFRVVAAILHIGNLEFGKGKEIDSSIPKDDKAKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINNSIGQDSNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKNHKRFIKPKLSRTDFTISHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCPFVSGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNVMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEVTEANADEKTVCQKILEKMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSTAAKTIQRRIRTHQARNHYLALQKKTIYVQSLWRGRLACKLYQHMRREAAAVKIQKNTRRYEARKAYTKLQASVLTLQTSLRAIAALKEYSFRKKTKAAIIIQTRWRCHKASSYYKRLKKGTIVTQCRWRGRVGRRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEESKSQEIAKLQNSLQEMQSKVDETNAMLVKERENAKKAIEEAPPVVQETQVIVEDTQKIESLTVEVETLKTSLESEKQKADDSESKYNEAQACSEERSKKLEDTEKKVRQLQESLTRLEEKITNLESENQVLRQQALSMAPSKFLSGRSRSTIQRADSGHIGVEAKTPLDMHSPSMNHRESSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSIFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLSQINGSMSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGASRSVASTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSKEQIDIFDIEPPPLIRENIGFSFLLPRSD* 1576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04131 1575 MobiDBLite consensus disorder prediction 1033 1068 - -
Rops8g04131 1575 Coils Coil 1021 1097 - -
Rops8g04131 1575 ProSiteProfiles Myosin motor domain profile. 108 778 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 MobiDBLite consensus disorder prediction 1138 1156 - -
Rops8g04131 1575 MobiDBLite consensus disorder prediction 1108 1157 - -
Rops8g04131 1575 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g04131 1575 Gene3D - 298 356 - -
Rops8g04131 1575 PANTHER MYOSIN 101 1506 - -
Rops8g04131 1575 Gene3D - 485 669 - -
Rops8g04131 1575 ProSiteProfiles IQ motif profile. 900 929 IPR000048 GO:0005515
Rops8g04131 1575 ProSiteProfiles IQ motif profile. 781 808 IPR000048 GO:0005515
Rops8g04131 1575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 929 IPR027417 -
Rops8g04131 1575 SMART iq_5 899 921 IPR000048 GO:0005515
Rops8g04131 1575 SMART iq_5 780 802 IPR000048 GO:0005515
Rops8g04131 1575 SMART iq_5 828 850 IPR000048 GO:0005515
Rops8g04131 1575 SMART iq_5 803 825 IPR000048 GO:0005515
Rops8g04131 1575 SMART iq_5 876 898 IPR000048 GO:0005515
Rops8g04131 1575 SMART DIL_2 1393 1500 IPR002710 -
Rops8g04131 1575 ProSiteProfiles IQ motif profile. 877 904 IPR000048 GO:0005515
Rops8g04131 1575 FunFam Myosin heavy chain 298 353 - -
Rops8g04131 1575 FunFam unconventional myosin-Va 879 927 - -
Rops8g04131 1575 Gene3D Kinesin motor domain 111 708 IPR036961 -
Rops8g04131 1575 Pfam DIL domain 1394 1497 IPR002710 -
Rops8g04131 1575 Pfam Myosin N-terminal SH3-like domain 55 97 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 Gene3D Myosin VI head, motor domain, U50 subdomain 358 647 - -
Rops8g04131 1575 PRINTS Myosin heavy chain signature 195 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 PRINTS Myosin heavy chain signature 138 157 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 PRINTS Myosin heavy chain signature 242 269 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 PRINTS Myosin heavy chain signature 528 556 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 PRINTS Myosin heavy chain signature 475 503 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 54 103 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 Pfam IQ calmodulin-binding motif 831 849 IPR000048 GO:0005515
Rops8g04131 1575 Pfam IQ calmodulin-binding motif 784 801 IPR000048 GO:0005515
Rops8g04131 1575 Pfam IQ calmodulin-binding motif 878 898 IPR000048 GO:0005515
Rops8g04131 1575 CDD MYSc_Myo11 122 766 IPR036018 -
Rops8g04131 1575 ProSiteProfiles IQ motif profile. 804 833 IPR000048 GO:0005515
Rops8g04131 1575 FunFam unconventional myosin-Va 783 831 - -
Rops8g04131 1575 Gene3D - 879 928 - -
Rops8g04131 1575 Gene3D - 780 831 - -
Rops8g04131 1575 Gene3D - 832 878 - -
Rops8g04131 1575 Coils Coil 962 1003 - -
Rops8g04131 1575 Pfam Myosin head (motor domain) 110 766 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g04131 1575 FunFam Myosin 2 358 475 - -
Rops8g04131 1575 FunFam Class V myosin 485 623 - -
Rops8g04131 1575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 831 IPR027417 -
Rops8g04131 1575 Coils Coil 923 957 - -
Rops8g04131 1575 CDD MyosinXI_CBD 1156 1541 IPR037975 GO:0007015
Rops8g04131 1575 Gene3D - 713 779 - -
Rops8g04131 1575 ProSiteProfiles Dilute domain profile. 1205 1518 IPR002710 -
Rops8g04131 1575 ProSiteProfiles IQ motif profile. 829 858 IPR000048 GO:0005515
Rops8g04131 1575 SMART MYSc_2a 103 779 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04131 Rops-Chr8 83326171 83339756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04131 47 1575 Myosins gene family AT1G54560 84.052 0.0 2723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04131 K10357 - gmx:100816792 2751.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04131 8 83326171 83339756 Rops8g04131 8 83326171 83339756 ECH
Rops8g04131 8 83326171 83339756 Rops6g01164 6 26388467 26406819 PCT