Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04117 ATGCTCTTTCTTCCTTCCTCTCCTCTTCGCCCTTCGTCCAACAACAACATTAACATTCTACCTTCGTCTCTTCCAAAATTTAACGTGGGAACAATCGCAACCCACTCACCTGAGGATTTGGTCAGATCCATTCCCAATACGAAGAAGAAGAAGAAGAAGAAGATGGTAGCGAAAGTGAGGAGACTGTCACTTGAAGCATGCATGACATGCCCTCTTTGCCATAAGCTATTGAGAGATGCTACCACCATATCTCTCTGCCTTCACACTTTTTGCAGGAAGTGCATATATGAGAAACTTTCAGATGAGGAGATGGATTGCTGTCCAGTGTGCAATATTGATCTGGGCTGTCTTCCAGTGGAAAAGCTCAGGCCTGACCACAATTTGCAAGATATTAGGTCCAAAATATTCCCTTTTAAACGAAAAATTATCAAAGCCCAAGAAGTTGTTCCTTCAATATCCCTTCCAACGAAAAGGAAGGAAAGATCACTTTCATCTTTGGTGGTTAGCGCTCCCAAAGTTTCAACACACACTGGTTTTACTGGAAAGAGAACAAAGACTGGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTATCCTGGAAGAATCCATAAAGACAGAAGAAACATATGGTGAAAATAATCTGGATTCTTCCATAGCTGAGCCTTCTAAGAAGCATAGGCCCAATGAAGATACAGAGAACAGTATGGACCTTACAGAAGGGAAGGTTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCAGCCAATAGAACAAAGTCCTCCAGGTCAAATTCACAAGGGACTCCTCTTGCCAAATTAGAGTCTCCAACTACTCCTTATGGTGGACTAGAGATGTCTGAAATCATAACCAAATCAGAGCCACATACTTCTGTCCAGGGTGAATTACACATGCCTAAAACCAAAAACAAGGATAATGGACATAAAACAAAAGTTGGAGATGACAAGGATGGAAACAGCTTGCCTTCAGGTCCAGTGAAGCGAAGAAGGCTGCGTCCTGCTAGTCAGAAAAGAGCAGCAGCATCTGAGATGTCTGCCTCAGGCCAAGTCACGTTAGATACTACAGGGAGCAGATGTAACAGGAAAAACAATCCTATTTGGTTTTCATTAGTTGCTTCAGAAGACCAGAAAGGAGATGTTTCCTTGCCACAGATTTCTGCAAGTTATTTAAGAATAAAGGATCGTACTGTGCCCGTCTCGTTTATTCAGAAGTACCTCGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTGGAAATATTGTGCCGGGGTCAGCCTGTGCTTCCATCTTTGCAACTGCATAACTTAGTAAATCTGTGGTTCTGTACAGCATCAAACTCAAAAAGGATACCGGCTTCTGTGGGCTCATCGGCTAAGGACTTTGTGATGGTTTTATCTTATTGTCGAAAGGCCTTACCACCTCGATGA 1452 0.4304 MLFLPSSPLRPSSNNNINILPSSLPKFNVGTIATHSPEDLVRSIPNTKKKKKKKMVAKVRRLSLEACMTCPLCHKLLRDATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRSKIFPFKRKIIKAQEVVPSISLPTKRKERSLSSLVVSAPKVSTHTGFTGKRTKTGTRKAAALRGCSFILEESIKTEETYGENNLDSSIAEPSKKHRPNEDTENSMDLTEGKVDLWTPLNCLVEAANRTKSSRSNSQGTPLAKLESPTTPYGGLEMSEIITKSEPHTSVQGELHMPKTKNKDNGHKTKVGDDKDGNSLPSGPVKRRRLRPASQKRAAASEMSASGQVTLDTTGSRCNRKNNPIWFSLVASEDQKGDVSLPQISASYLRIKDRTVPVSFIQKYLVKKLNLASEAEVEILCRGQPVLPSLQLHNLVNLWFCTASNSKRIPASVGSSAKDFVMVLSYCRKALPPR* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04117 483 CDD RING-HC_PCGF 68 111 - -
Rops8g04117 483 MobiDBLite consensus disorder prediction 210 241 - -
Rops8g04117 483 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 55 481 IPR044807 GO:0004842
Rops8g04117 483 MobiDBLite consensus disorder prediction 258 284 - -
Rops8g04117 483 MobiDBLite consensus disorder prediction 306 324 - -
Rops8g04117 483 MobiDBLite consensus disorder prediction 296 364 - -
Rops8g04117 483 MobiDBLite consensus disorder prediction 258 275 - -
Rops8g04117 483 ProSitePatterns Zinc finger RING-type signature. 86 95 IPR017907 -
Rops8g04117 483 MobiDBLite consensus disorder prediction 348 364 - -
Rops8g04117 483 ProSiteProfiles Zinc finger RING-type profile. 70 111 IPR001841 -
Rops8g04117 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 156 IPR013083 -
Rops8g04117 483 MobiDBLite consensus disorder prediction 220 239 - -
Rops8g04117 483 Gene3D - 354 457 - -
Rops8g04117 483 SMART ring_2 70 110 IPR001841 -
Rops8g04117 483 SUPERFAMILY RING/U-box 66 136 - -
Rops8g04117 483 Pfam Zinc finger, C3HC4 type (RING finger) 70 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04117 Rops-Chr8 83119247 83124952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04117 55 401 C3H Transcription Factor Family AT2G30580 45.232 8.81e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04117 K16277 - gmx:100783999 681.019