Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04110 ATGACAAGTGTTATGGAGGCAGAGCGAGACAAGTACAGTACCATCAATTTTGAAGAAACTGAGTTGCGACTCGGGCTGCCCCTGAGTGGAAATGAAGGCGAGTCCACTCGCAAGAATAGCTTAACTGGAAAGAGAGGTTTTTCAGATACAAGTGTGGATTTGAAGCTTAATCTTTCCTCAAATAATGTCATACCCTCAGGCTCTTCTTCATCTCTGGCTAAAGAGAAGACCACTGGTGGTACCTCTACTGTAACCCCTCCTCCTCGTGCTAACGACCCAGCAAAGCCACCTGCAAAGGCACAAGTAGTGGGTTGGCCACCAGTCAGGTCATTCAGAAAGAACATTGTTAACGTTCAAAAGAGTAACAATGAAGCAGAAAAGGCCACCACTACCGCAACCACAAGCAGCAATACCAGCAACATGGGAGCAGCTTTTGTGAAGGTGAGCATGGATGGTGCACCCTATCTACGCAAGGTGGACTTGAAGTTGTACAAGAGCTACCAAGAGTTATCAGATGCACTAGCTAAAATGTTCAGTTCATTCACTGTTGAAAAATGCGGTTCCCAAGGCATGAAGGACTTCATGAATGAGAGCAAATTGATAGATCTTTTAAATGGTTCTGATTATGTACCAACCTATGAAGACAAAGATGGAGATTGGATGCTTGTGGGTGATGTACCATGGAAGATGTTCGTTGAATCATGCAAGCGCCTGCGATTAATGAAAGGATCTGAGGCAATTGGGCTAGCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 786 0.4504 MTSVMEAERDKYSTINFEETELRLGLPLSGNEGESTRKNSLTGKRGFSDTSVDLKLNLSSNNVIPSGSSSSLAKEKTTGGTSTVTPPPRANDPAKPPAKAQVVGWPPVRSFRKNIVNVQKSNNEAEKATTTATTSSNTSNMGAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTVEKCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWKMFVESCKRLRLMKGSEAIGLAPRAVEKCKNRS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04110 261 Gene3D - 137 255 - -
Rops8g04110 261 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 248 IPR003311 GO:0005634|GO:0006355
Rops8g04110 261 MobiDBLite consensus disorder prediction 24 101 - -
Rops8g04110 261 MobiDBLite consensus disorder prediction 32 88 - -
Rops8g04110 261 FunFam Auxin-responsive protein 138 253 - -
Rops8g04110 261 Pfam AUX/IAA family 19 252 IPR033389 -
Rops8g04110 261 Coils Coil 108 128 - -
Rops8g04110 261 ProSiteProfiles PB1 domain profile. 143 243 IPR000270 GO:0005515
Rops8g04110 261 SUPERFAMILY CAD & PB1 domains 141 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04110 Rops-Chr8 83032384 83034907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04110 126 246 B3 DNA Binding Superfamily AT3G61830 30.579 3.77e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops8g04110 AUX_IAA 9e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04110 K14484 - gmx:100796888 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04110 8 83032384 83034907 Rops8g04110 8 83032384 83034907 ECH