Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04106 ATGGAAAGGGTGTTTTCTGGGGATGAAGTATCGGAGGAGTATTGGTCGTGCAAGTCAAAGTCAAAGATGAATAGGAGTACTTCGGAATGGGCGTTCCAGCAGTTTCTGAAGGAAGCATCATCTTGTGTTGAAGCAGAGGCAGACACGTCATCACAGCTTTCATATTCTTCATCGGTTGATGTGAAACAGATAAAAAAGGATCCAGGTAGCATCACAGCACCTCTTGATTCAGAGGACTACCAAACTATCCTCAAAACCAAGCTTAATCTCGCCTGCGCCGCCGCCGCCGCCGCTTTCACTGGGGGATCTTTGGTCAAATCTCAAGATCCTGCCACTTTTCCTGACAGTGGATCACAGGCATCAAATCCTTCTGAAGTTGGATCTCATGCAATTATAAAAGAATATGGCCCTTCAGGAAATGATCCATCTAAATTACAAAATAAAGATGTCAAAATACCAGTTGGGGTTCCTCCCATGCAAAAGAAACCTGCTCTTACAATCAGGTCAACAACAAGTGGATCATCAAAAGAACAGTCAGATGACGAGGAAGCTGAGGGAGAATTTAATATGACTGACAGCATGAACCCTGCTGATGCCAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCTGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTTGAGACACAGGTCTCTCAATTAAGAGGTGAAAATTCTTCATTGGTAAAGCGCTTAACGGATGTCAGCCAGAAATTCAATGATGCTGCTGTTGACAACAGAATATTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACAGTCAAAAGAATTACAGGGTTGAACCCAATGTTTAATGGCATGAGTGAGATATCATCAATGGGAATGCCATTATTTGATGGAAGCGGTTCTGAGGCATCAGCAGATGCATCTGTACCTGTGCAAGAAGACACAACAAATCATCACTTTTGTCAACCAAGTTCTAATAATCTTATGTCAAGTCATGATGTGAGAGTCAACATTTCTTCAGTTGAAAATGTGCAGCAGAACACTGCAGCAGTGGTTGGTGGGGACAAGGTGGGGAGAACAAATTCCATGCAGAGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGCTGGACATCCTCCCAATGGAGAGCAATAA 1188 0.4369 MERVFSGDEVSEEYWSCKSKSKMNRSTSEWAFQQFLKEASSCVEAEADTSSQLSYSSSVDVKQIKKDPGSITAPLDSEDYQTILKTKLNLACAAAAAAFTGGSLVKSQDPATFPDSGSQASNPSEVGSHAIIKEYGPSGNDPSKLQNKDVKIPVGVPPMQKKPALTIRSTTSGSSKEQSDDEEAEGEFNMTDSMNPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLVKRLTDVSQKFNDAAVDNRILKADVETLRAKVKMAEETVKRITGLNPMFNGMSEISSMGMPLFDGSGSEASADASVPVQEDTTNHHFCQPSSNNLMSSHDVRVNISSVENVQQNTAAVVGGDKVGRTNSMQRVASLEHLQKRIRGGAGHPPNGEQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04106 395 Coils Coil 258 278 - -
Rops8g04106 395 MobiDBLite consensus disorder prediction 105 126 - -
Rops8g04106 395 FunFam BZIP transcription factor 198 249 - -
Rops8g04106 395 MobiDBLite consensus disorder prediction 105 200 - -
Rops8g04106 395 Coils Coil 209 243 - -
Rops8g04106 395 SUPERFAMILY Leucine zipper domain 200 249 IPR046347 GO:0003700|GO:0006355
Rops8g04106 395 Pfam Basic leucine-zipper C terminal 267 387 IPR020983 -
Rops8g04106 395 Gene3D - 199 253 - -
Rops8g04106 395 CDD bZIP_plant_GBF1 201 252 IPR045314 GO:0003700|GO:0006355
Rops8g04106 395 SMART brlzneu 196 260 IPR004827 GO:0003700|GO:0006355
Rops8g04106 395 Pfam bZIP transcription factor 199 248 IPR004827 GO:0003700|GO:0006355
Rops8g04106 395 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 252 IPR004827 GO:0003700|GO:0006355
Rops8g04106 395 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Rops8g04106 395 PANTHER BASIC LEUCINE ZIPPER 63 1 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04106 Rops-Chr8 82981705 82986910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04106 1 293 bZIP Transcription Factor Family AT4G02640 38.066 3.27e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops8g04106 bZIP_C 3.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04106 K25784 - gmx:778137 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04106 8 82981705 82986910 Rops8g04106 8 82981705 82986910 ECH
Rops8g04106 8 82981705 82986910 Rops6g01759 6 35241887 35245642 PCT