Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04095 ATGGAGAGCGTACAGTACTGTTACAGCCAAAAATCTCTTCAAGAATTCTTCAAAGTTTTCATGCAAAAGACAGGTTTTCCGCAACTGCGCATACCAAAGTCTTTCAACAAGTTCTTCAATGGTACCACACCATGCGAGGTCACTCTTATAGATCAAGATAGAAATTCTTGGGATATTTGCTTGGAGAAAATCGAGGATCGCTTGGTTTTTAGAAACGGGTGGCAGCAATTTGCTTGGGAGAAACGCTTAGAAGAAGGGGATTTCTTGGTTTTTGGGTATGATGACAAGTCAACTTTTTATGTCAAGATATTTTCTAAAACTGGATGCAGGAAAGACGCTGCAAGTTGTGGAAAAATTGTTCCCATTGTGATTTTGGATGAAAATTCTGACCAGAGTTGTAGAAAAATCCCACGGGGTCCCAAACGGAAACATTCACCACCAGCCACCAAAATAAATGAGAAATCAGATTCAAAGGGTCCATCTGAAGGAGCTCAGAGCAAATCAAAAAGACCTAAAGAAGAAAATGATAACCACTATGAGAAGAAGGTACCTGGTCTGGCAACCTGTGTTCCACCGAAGAACCCTCATTTTGTGGTATATTTGTCACGCTGGAAACTGCATAGAGTGGAAGTTCCTAAAGAAGTAATGAAGCAATGGAATATCAGACTGATCCCAAAGATGAGTCTGAGAGATGAGAATAACAAACTATGGCCAGTGTCTATCATTACCACCAATAATGGCCGTCATTATATAGGCGATGGGTGGTCTAATTTCCGGCAGTCTCACAATATTAAAGAAGGCCACCGATGTGATTTTCAGTTTGTAATCGACAATACAAATCTAGCTCAAGAACTGCTTGTGCATGTCCATTCACCTTCCAAATTGCAAGTCACAGAGTCAGAGTCATGGAGAGCGCACAGCATTGTTCCGCCCAAAGAACCTTTCAAGAATTCTTCAAAGTTTTCATGCAAAACACAGCTACCAAAGTCTTTCAACAAGTTCTTCAATGGAACCACGCCATGCAAGGAAGTTCCTAAAGAAGTAATGAAGCAATGGAATATCAAACTGATCCCAAAGATGTGTCTGAGAGATGAGAATAACAAATTGTGGCCAGTGTCTATCATTACCGGCTATAACGGCCGTTATTATTTGGGTGATGGGTGGTCTAATTTCCGGCAGTCTCACAATATTGAAGAAGGGTACCGATGTGATTTTCAGTTTGTAATCGGCAATGCAAATCTAGCCCATGAACTGCTTGTGCGTGTACACCCACCTTCCAAATGCCTACTAGTAAAGTAG 1299 0.4119 MESVQYCYSQKSLQEFFKVFMQKTGFPQLRIPKSFNKFFNGTTPCEVTLIDQDRNSWDICLEKIEDRLVFRNGWQQFAWEKRLEEGDFLVFGYDDKSTFYVKIFSKTGCRKDAASCGKIVPIVILDENSDQSCRKIPRGPKRKHSPPATKINEKSDSKGPSEGAQSKSKRPKEENDNHYEKKVPGLATCVPPKNPHFVVYLSRWKLHRVEVPKEVMKQWNIRLIPKMSLRDENNKLWPVSIITTNNGRHYIGDGWSNFRQSHNIKEGHRCDFQFVIDNTNLAQELLVHVHSPSKLQVTESESWRAHSIVPPKEPFKNSSKFSCKTQLPKSFNKFFNGTTPCKEVPKEVMKQWNIKLIPKMCLRDENNKLWPVSIITGYNGRYYLGDGWSNFRQSHNIEEGYRCDFQFVIGNANLAHELLVRVHPPSKCLLVK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04095 432 CDD B3_DNA 344 414 IPR003340 GO:0003677
Rops8g04095 432 SUPERFAMILY DNA-binding pseudobarrel domain 191 290 IPR015300 -
Rops8g04095 432 SMART B3_2 197 293 IPR003340 GO:0003677
Rops8g04095 432 SMART B3_2 311 426 IPR003340 GO:0003677
Rops8g04095 432 SMART B3_2 16 107 IPR003340 GO:0003677
Rops8g04095 432 Pfam B3 DNA binding domain 344 412 IPR003340 GO:0003677
Rops8g04095 432 Pfam B3 DNA binding domain 203 278 IPR003340 GO:0003677
Rops8g04095 432 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Rops8g04095 432 MobiDBLite consensus disorder prediction 133 186 - -
Rops8g04095 432 ProSiteProfiles B3 DNA-binding domain profile. 194 293 IPR003340 GO:0003677
Rops8g04095 432 SUPERFAMILY DNA-binding pseudobarrel domain 339 412 IPR015300 -
Rops8g04095 432 CDD B3_DNA 195 281 IPR003340 GO:0003677
Rops8g04095 432 ProSiteProfiles B3 DNA-binding domain profile. 327 426 IPR003340 GO:0003677
Rops8g04095 432 MobiDBLite consensus disorder prediction 163 181 - -
Rops8g04095 432 Gene3D - 325 428 IPR015300 -
Rops8g04095 432 Gene3D - 7 109 IPR015300 -
Rops8g04095 432 Gene3D - 190 304 IPR015300 -
Rops8g04095 432 CDD B3_DNA 16 105 IPR003340 GO:0003677
Rops8g04095 432 SUPERFAMILY DNA-binding pseudobarrel domain 12 109 IPR015300 -
Rops8g04095 432 PANTHER B3 DOMAIN-CONTAINING 328 407 - -
Rops8g04095 432 ProSiteProfiles B3 DNA-binding domain profile. 29 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04095 Rops-Chr8 82814976 82821717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04095 11 291 B3 DNA Binding Superfamily AT5G66980 32.268 1.51e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g04095 B3 2.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04095 - - gmx:102669908 334.339