Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04093 ATGGAGAGCGCACAGCATTGCTCCGCCCTAAGAACCCTTCAAGAGTTCTTCAAAGTTTTCATGCAGAAGACAGGTTTTCCCCAGTTGCGCATACCAAAGTCTTTCAACAAGTTCTTTAATGAAACCACGCCATGCAATGTCACTCTTATAGATCAAGATAGAAATTCTTGGGATATTTGCTTGGAGAAAATCGAGGATCGCTTGGTTTTTAAAAACGGGTGGCAGCAATTTGCCTGGGAGAAACGCTTAGAAGAAGGGGATTTCTTGGTTTTTGGGTATGATGGCAAGTCAACATTTTATGTTAAGATATTTTCTAAAACTGGATGCAGGAAAGATGCTGCAAATTGTGGAAAAGTTGTTCCCATTTTGATTTTGGATGAAAACCCTGACCAGAGTGGTAGTAGAAAAATCCCACGGGGTCGCAAACGGAAACATTCACCACCAGCCACCAAAATAAATGAGAAATCAGATTCAAAGGGTCCATCTGAAGGAGCTCAGAGCAAATCAAAAAGACCTAAAGAAGAAAATGGTAACCACTATGAGAAGAAGGTACCTGGTCTGGCAAACTGTGCTCCACTGAAGAACCCTCATTTTGTGGTATATTTTTCTCGCTGGAAACTGCATAGAGTGGAAGTTCCTAAAGCAGTAACGAAGCAATGGAATATCAAACTGATCCCAAAGATGAGTCTGAGAGATGAGAATAACAAACTATGGCCAGTGTCTATCATTACTGCCGATAACGGCCGTCATTATATAGGTGATGGGTGGTCTAGTTTCCGGCAGTCTCACAATATTAAAGAAGGCCACCGATGTGATTTTCAGTTTGTTATGGGCAAAGCAAATCTAGCTCAAGAACTGCTTGTGCGTGTACATCCACCTTCCAAATGCCAATAG 894 0.4183 MESAQHCSALRTLQEFFKVFMQKTGFPQLRIPKSFNKFFNETTPCNVTLIDQDRNSWDICLEKIEDRLVFKNGWQQFAWEKRLEEGDFLVFGYDGKSTFYVKIFSKTGCRKDAANCGKVVPILILDENPDQSGSRKIPRGRKRKHSPPATKINEKSDSKGPSEGAQSKSKRPKEENGNHYEKKVPGLANCAPLKNPHFVVYFSRWKLHRVEVPKAVTKQWNIKLIPKMSLRDENNKLWPVSIITADNGRHYIGDGWSSFRQSHNIKEGHRCDFQFVMGKANLAQELLVRVHPPSKCQ* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04093 297 SUPERFAMILY DNA-binding pseudobarrel domain 193 278 IPR015300 -
Rops8g04093 297 SMART B3_2 198 294 IPR003340 GO:0003677
Rops8g04093 297 SMART B3_2 16 107 IPR003340 GO:0003677
Rops8g04093 297 ProSiteProfiles B3 DNA-binding domain profile. 29 107 IPR003340 GO:0003677
Rops8g04093 297 MobiDBLite consensus disorder prediction 164 181 - -
Rops8g04093 297 CDD B3_DNA 206 282 IPR003340 GO:0003677
Rops8g04093 297 ProSiteProfiles B3 DNA-binding domain profile. 195 294 IPR003340 GO:0003677
Rops8g04093 297 CDD B3_DNA 16 105 IPR003340 GO:0003677
Rops8g04093 297 PANTHER B3 DOMAIN-CONTAINING 14 278 - -
Rops8g04093 297 Pfam B3 DNA binding domain 206 277 IPR003340 GO:0003677
Rops8g04093 297 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Rops8g04093 297 SUPERFAMILY DNA-binding pseudobarrel domain 15 109 IPR015300 -
Rops8g04093 297 Gene3D - 10 109 IPR015300 -
Rops8g04093 297 Gene3D - 191 296 IPR015300 -
Rops8g04093 297 MobiDBLite consensus disorder prediction 130 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04093 Rops-Chr8 82797918 82799414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04093 15 290 B3 DNA Binding Superfamily AT5G66980 31.169 4.17e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g04093 B3 3.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04093 - - gmx:102669908 333.954