Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04090 ATGAAAGGTGAAGGTAAAACCAGAGTTCACCATGAAGTTACCATTGTCATTGAAATCCTTCATTCAGAAACCTGTTTTGGAATCTACACTGGTTTCTTGCCAGTGATAATTTTTGTAGGGTCACACAATAGTGCTTCTGCTGCTTCTTCTTCTCCAACAACGGTGTCGTTTTGCACTTTCTCTACCAATGTCGAAGCTCGCATTCTCAGATTTGTCTCTTCCTTCAACCTTTTGAATCTCTTCTATTTGCTGAACTCGTTCTTATCCTTGCTCTCAGTCTGTATTTTGTACCCAGGAAAGGGAAATCTCTTGCTTATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGATCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAAATTCGCCTTGCCCGTCAAACTGAGCGCTCTCGTAGGTCTGCACACCTGGAGATGGAGCTCATCTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTGTTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTTCCAGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCACTTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGGCATACGTCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAACTCCTTGCTGATATACCCTACGGTTCTAAATCAGATATTTGGTCTTTGGGATGTTGTATATATGAAATGACTTCGCATAAGCCTGCATTCAAAGCTTTTGATATACAATCCCTGATTAACAAGATTAACAAGTCCATAGTGGCTCCGCTGCCAACAACGTATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTACGGAAAAATCCAGAGCTGAGGCCTAGTGCTGCAGAGTTACTTAGGCACCCACATCTTCAACCTTATGTTCTTAAGATCCATCTCAAAATTAATAGCCCCAGGCGAAGTACATTGCCAGGTCATTGGCCAGATTCTAATTACGTGAAGAAAACTAGATTTTTGAAGCCAAAAGGTGATCCTGTTTCCATCTCTGAGGATAAGCGGCATTCTTTCAGCAATGATCGGACTTTAAATCCTAGTGTATCTGGAGCAGAGCAAGATTCACTATGCTCTACCGTAGAAATAGATTGTACCCCTGATCATTTGAATCAAAGATTAGCTGAATTGTGTGTTGGAGATAGCCATGACGTAAAGTCAATCCATAGTCCAACTGTTTCCAGAACTTCTAGTATTGCCAAGACTCCAAGACTCACTTCATCAAAAGCTTCTGTAACCCCCAAGAAATCAATGGAACCCTCAAAGACTCATAAGCTTCCTGTTTCACACAATAGCAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCATTGCCAAGAAGTTGTGCCATTCAGCCGCCTCCTCGCAGGCCCAGTGTTGGTTTACTTGGCCCTGCAAATTCGCCCAATATTTCGGTTAACTCTCCCCGTATTGACAAGATAGCAGAATTCCCATTAGCATCATATGAAGATCAATTGTTTCCCATCAATAGATCTTCACCAACCTCCGCGCAGGGTTCCTCAGGCTCCCCTCCTCGTGGCAATGACTCAACTTTGATAGACAAATGCACAGTCAAGGTATGTGACAGGGCCTACGTCAGGCCTAGTTGTGCTGATGCTTGGCGGGGAATTAAGCGGAGCATGTTGACGGACGATGCCAAAAGTGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCCACAACTCTTCAGATTTGCGCCGCCGGCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTAGAGGGGTTGCTTGAATTCAGTGCAAGATTGCTACAACAGGAAAGGTATGGAGAACTTGAGGTTTTGTTAAAACCGTTTGGGCCCGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTAACCAAGAGTTTCAAAGAGAACGCTGTCAACAGGGAACAATCCGCGTGA 2181 0.4305 MKGEGKTRVHHEVTIVIEILHSETCFGIYTGFLPVIIFVGSHNSASAASSSPTTVSFCTFSTNVEARILRFVSSFNLLNLFYLLNSFLSLLSVCILYPGKGNLLLIDDMEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIVIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDHGIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQSLINKINKSIVAPLPTTYSGAFRGLVKSMLRKNPELRPSAAELLRHPHLQPYVLKIHLKINSPRRSTLPGHWPDSNYVKKTRFLKPKGDPVSISEDKRHSFSNDRTLNPSVSGAEQDSLCSTVEIDCTPDHLNQRLAELCVGDSHDVKSIHSPTVSRTSSIAKTPRLTSSKASVTPKKSMEPSKTHKLPVSHNSKQPVHTTRRASLPLPRSCAIQPPPRRPSVGLLGPANSPNISVNSPRIDKIAEFPLASYEDQLFPINRSSPTSAQGSSGSPPRGNDSTLIDKCTVKVCDRAYVRPSCADAWRGIKRSMLTDDAKSGSSDQNATAGASSHNSSDLRRRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELEVLLKPFGPGKASPRETAIWLTKSFKENAVNREQSA* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04090 726 SMART serkin_6 112 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04090 726 CDD STKc_Nek 111 366 - -
Rops8g04090 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Rops8g04090 726 MobiDBLite consensus disorder prediction 404 431 - -
Rops8g04090 726 Gene3D Phosphorylase Kinase; domain 1 99 191 - -
Rops8g04090 726 MobiDBLite consensus disorder prediction 576 597 - -
Rops8g04090 726 Gene3D Transferase(Phosphotransferase) domain 1 192 379 - -
Rops8g04090 726 ProSiteProfiles Protein kinase domain profile. 112 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04090 726 MobiDBLite consensus disorder prediction 576 599 - -
Rops8g04090 726 FunFam Serine/threonine-protein kinase Nek3 194 440 - -
Rops8g04090 726 MobiDBLite consensus disorder prediction 503 518 - -
Rops8g04090 726 MobiDBLite consensus disorder prediction 631 661 - -
Rops8g04090 726 MobiDBLite consensus disorder prediction 631 652 - -
Rops8g04090 726 MobiDBLite consensus disorder prediction 404 420 - -
Rops8g04090 726 MobiDBLite consensus disorder prediction 466 496 - -
Rops8g04090 726 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Rops8g04090 726 SUPERFAMILY Protein kinase-like (PK-like) 109 367 IPR011009 -
Rops8g04090 726 Pfam Protein kinase domain 112 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04090 726 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 109 676 - -
Rops8g04090 726 MobiDBLite consensus disorder prediction 466 554 - -
Rops8g04090 726 FunFam Serine/threonine-protein kinase Nek2 109 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04090 Rops-Chr8 82776369 82787289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04090 118 367 MAP Kinase Kinase Kinase AT1G53570 31.373 7.33e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops8g04090 Pkinase 1.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04090 K08857 - gmx:100796019 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04090 8 82776369 82787289 Rops8g04090 8 82776369 82787289 ECH
Rops8g04090 8 82776369 82787289 Rops6g01763 6 35303470 35319270 PCT