Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04089 ATGTTCGACGGTGCATCAGAGCAGTTCCACCAATTGGTAACACCACGAACCACTCTTCCACTTCACTTACCTTTCCCCCTTCATGCCTCTACAACCCCAAATAGTTTTCTATCCTTTGATCCTTATAACCCTCCTCATCATCAATTGCCACTTCAAACCAATCTCTTGCACACCCACAAAGATGAAGAAAAGGAAGCATTAGCAAATAGCACTGTTTCTTCAATCAACTTGGAGATTGAAGGAAATCAAAGACAATTACCAGAGTTGTTTGATTCTTGGACCAGTGAGGAAGTGCTTGCAGTGTTGAGGATCAGATCTAGCATGGAGAATTGGTTCCCAGATATCACATGGGAGCATGTATCAAGAAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAAAAGTTTGAAGATGCAAGCAGATATTTCAACAACATTAACTATGGCAAGAGTTACCTTTTTCTTAGTGAGCTTGAAGAGCTTTATCAAGGTGATCAAAACCCTGATCCAGGTTATCGGGTTGTTACTGAAAAGACCACCCAGAAACTTGAAAAACCAATGGGACGAGACATGGTGGACCACACATTGGAAGAAAATTCAAGAGATATTGACACAACAGTAGTGACCAAACAATGTGATGGAAATGACAAGATGGTGGAGGAGAAGTCAAAGGAGAAGAAGAGGAAGAGGCGTGATAGGTTTGAAATGTTCAAGGATTTCTGTGAGAGTATTGTGAACCAAATGATGGCTCAACAAGAAGAAATACACAATAAGCTTCTCAAAGACATGATGAAAAGAGATGAAGAGAAGCTTGCAAGAGAGGAAGCATGGAAAAAGCAAGAAATGGATAGAATGGACAAAGAGCTTGAGATGATGGCACAAGAACAAGCTATTGCGGGTGATAGACACGCCACCATTATTGAATTCTTGAAGAAATATGTAGCAACAAGCTCCCCAGCAAGCAAAAACTTCAGAGGTGGAAATCCTAAGCATAAAACAAACAGTTCAAATAGAAATTCTTCCTCATTGCACTCACAAAACCCTAATCCTTCTTCTGGAGAGAACAATCTTGAGCCAACACCTTCTTCTAATATGATTCTAGATCATCAAACTACTACTTGTACTTCACCTTGCCAAAACAATTCAGCCTTACCCATCAAGTTGGGTGCAGAAAACCCTAGCTCAAGTGACACATTGTTACAAGTTCCTTCTTCCAATTCATCTCCAGCTACCCACAACCCTAGTTCTTCACTCAACAGCCATGATAATCCACTAGAGTCAAATTCAGTTTCCATATATAAAGTCACCTCAACCCTTATGCAGAAAGAGGATGTTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCACTGATTAACCTCAGGTGCACAAGTCTGAATAGCAATAATGATGACAAGGGAGGAAATAAGGCTCCTCTGTGGGAAAGAATCTCACAAGGGATGTCAGAACTGGGATATAAGAGAAGTGCAAAGAGATGCAAAGAAAAATGGGAAAACATAAACAAGTATTTTAGAAAAACCAAGGATGTTAATAAGAAAAGGTCACTAGATTCTAGGACCTGTCCCTACTTCCATCAACTCAGTTGTTTGTATAATGAGGGAAAACTTGTTCCACAATGTGAAAAGCCAGAGAACCACTTGAATCCAACCGCGAATTCTGGGGAAGTGCCACCCGATCAAGCACAAGCCGAGTCCTCTCAAGTGGGGTCTGTTGATTTAATTCAGAATGCATATGTTGATCATTGA 1776 0.4088 MFDGASEQFHQLVTPRTTLPLHLPFPLHASTTPNSFLSFDPYNPPHHQLPLQTNLLHTHKDEEKEALANSTVSSINLEIEGNQRQLPELFDSWTSEEVLAVLRIRSSMENWFPDITWEHVSRKLAELGFKKSAEKCKEKFEDASRYFNNINYGKSYLFLSELEELYQGDQNPDPGYRVVTEKTTQKLEKPMGRDMVDHTLEENSRDIDTTVVTKQCDGNDKMVEEKSKEKKRKRRDRFEMFKDFCESIVNQMMAQQEEIHNKLLKDMMKRDEEKLAREEAWKKQEMDRMDKELEMMAQEQAIAGDRHATIIEFLKKYVATSSPASKNFRGGNPKHKTNSSNRNSSSLHSQNPNPSSGENNLEPTPSSNMILDHQTTTCTSPCQNNSALPIKLGAENPSSSDTLLQVPSSNSSPATHNPSSSLNSHDNPLESNSVSIYKVTSTLMQKEDVGRRWPRDEVLALINLRCTSLNSNNDDKGGNKAPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSCLYNEGKLVPQCEKPENHLNPTANSGEVPPDQAQAESSQVGSVDLIQNAYVDH* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04089 591 ProSiteProfiles Myb-like domain profile. 452 511 IPR001005 -
Rops8g04089 591 PANTHER FI21293P1 61 577 - -
Rops8g04089 591 FunFam Trihelix transcription factor GT-2 93 149 - -
Rops8g04089 591 Pfam Myb/SANT-like DNA-binding domain 91 151 IPR044822 -
Rops8g04089 591 Pfam Myb/SANT-like DNA-binding domain 451 537 IPR044822 -
Rops8g04089 591 MobiDBLite consensus disorder prediction 555 578 - -
Rops8g04089 591 MobiDBLite consensus disorder prediction 553 578 - -
Rops8g04089 591 MobiDBLite consensus disorder prediction 323 430 - -
Rops8g04089 591 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Rops8g04089 591 CDD GT1 451 518 - -
Rops8g04089 591 Gene3D - 453 516 - -
Rops8g04089 591 Gene3D - 93 149 - -
Rops8g04089 591 FunFam Trihelix transcription factor GTL2 453 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04089 Rops-Chr8 82757830 82760096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04089 1 543 Trihelix Transcription Factor Family AT5G28300 35.795 3.22e-89 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops8g04089 Myb_DNA-bind_4 4.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04089 - - gmx:100801868 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04089 8 82757830 82760096 Rops8g04089 8 82757830 82760096 ECH
Rops8g04089 8 82757830 82760096 Rops6g01765 6 35326873 35329316 PCT