Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04082 ATGAATGGTGTGACAGAGGTTGAAGCAGATTACTGTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCCAAGACTGTATATAAAGCATTTGATGAATATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTGTATGATTTCCTGCAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAGACATTGAAGCACAGAAACATCATGAAATTTTACACTTCTTGGGTTGATACTGCTAATAGGAATATCAATTTTGTTACAGAAATGTTCACTTCTGGTACTCTTAGACAGTATAGGCTAAAGCACAGGAGAGTTAATATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGAGGACTTCTCTATCTTCATAGCCATGACCCACCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATTAATGGAAACCAAGGAGAAGTGAAGATTGGGGATCTTGGCCTGGCTGCAATTCTCCGGAAATCCCATGCTGCTCATTGTGTAGGAACGCCCGAATTCATGGCACCAGAAGTATATGAAGAGGCGTATAATGAACTAGTTGACATATATTCCTTTGGTATGTGTGTGTTAGAAATGGTCACATTTGAATATCCTTATAGTGAATGCAACCATCCAGCACAAATCTACAAGAAAGTTATTTCTGGGAAAAAACCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTACGACAATTTGTTGAGAAATGCCTGGCAACAGTATCTCAAAGACTGTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCGAATTGATGATTGCGAATATGATTTGGGACCAGTTGACAGTGGAGCATTTGATGACTTGGGTCCTCTCATTAGTCAGCAATTCTTTGATCTCCATTGGAGTTATAGTAACTTAAGTACTGAATACTCAAATGGCTTTGGGTACGAAGGAGACTGGTATTCTCATCCAGCTGAGATTGAACCTTGTGGAATCGAGCTTTTCGAGTGCCATGATGATGAACCCTCCAAAGATGTTGACATAAGCATCAAAGGCAAGAGGAATGATGAAGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGGTCATATTCGAAACATTTATTTCCCGTTTGACATAGAGATGGACACTGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCAACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGGCCGGGGCCAGGAATAGAGGAAATTACCCATTTTGCAAATCAAAGTTTCTGTCACAATTGTGTATCTAATCACACTTCTGGTGGCACTGATATGGACTTTCTTTCACATAATCATGATAAACAGCTGCAATGTTGTAGGCATGGATGTGCTTCAATGCATGGTCGGTTTGAGGAGATCACCTTCCAATCTGACGAGTATGACAACCATGTTAGAGAGAATGCACCACCTAAAGTATCAAGCCAGTCAGACTGTTTGCAGTATCATGAGTCATGGAATCATCACGTAAGCCGTGAACTGAGTCCGGTAGATTCTGCTCGAAGCCATTCTGATGAACAATATGAACAATGCGATAAACTAGTGTTATCAGAAGATAAGGGACATGAGGTTTGGGAAAATAGGTTTGCACCTGATACAGGAAACTCCTTACAAAATTTATCAGGAACTCATTATTCCTCTACTCTCAGTTCATTATATTGTGGCCTTGAGAATGAATATGAGAAAGACATCCAACAAGAGCTGAGATGGCTCAGAGCAAAATACCAAATGGAGTTAAGGGAACTCAGGGATAAACAGTTTGGTCTAGCAGCCACTTCTTCACATTCTAGTAACAGAAAGCACAAAACAGAACAAGACATTATTATGCCACCTCCACTGAAAGAAACAGCAAACGAGGTAGACCATGGGACTCACTTGAAACCCTTTGGTAATTACTTGAATTATGATTCCAGTTGCCATTCTCAAGTCCAAAAGATCCACCCCAATTTGGACACCCAAAGGGCCCAAAATTGCGAGGTAATGTGTTCTCGAGCAGAAGGCATGGTTAATGCAAAGGGTTTCTACAAACGGTCCTTGCTTCCAGACACTCTATACAGGACAGTTTCACTCCCTGTTGATGCTGTGGATGCATAA 2220 0.4081 MNGVTEVEADYCEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSQRLSARELLDDPFLRIDDCEYDLGPVDSGAFDDLGPLISQQFFDLHWSYSNLSTEYSNGFGYEGDWYSHPAEIEPCGIELFECHDDEPSKDVDISIKGKRNDEGGIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELNITDQDVTRIADMIDGEIASLVPEWRPGPGIEEITHFANQSFCHNCVSNHTSGGTDMDFLSHNHDKQLQCCRHGCASMHGRFEEITFQSDEYDNHVRENAPPKVSSQSDCLQYHESWNHHVSRELSPVDSARSHSDEQYEQCDKLVLSEDKGHEVWENRFAPDTGNSLQNLSGTHYSSTLSSLYCGLENEYEKDIQQELRWLRAKYQMELRELRDKQFGLAATSSHSSNRKHKTEQDIIMPPPLKETANEVDHGTHLKPFGNYLNYDSSCHSQVQKIHPNLDTQRAQNCEVMCSRAEGMVNAKGFYKRSLLPDTLYRTVSLPVDAVDA* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04082 739 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Rops8g04082 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Rops8g04082 739 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Rops8g04082 739 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Rops8g04082 739 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04082 739 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Rops8g04082 739 FunFam probable serine/threonine-protein kinase WNK9 371 455 - -
Rops8g04082 739 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 645 - -
Rops8g04082 739 Coils Coil 607 627 - -
Rops8g04082 739 CDD STKc_WNK 22 281 - -
Rops8g04082 739 Gene3D - 371 437 - -
Rops8g04082 739 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04082 739 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Rops8g04082 739 FunFam Probable serine/threonine-protein kinase WNK1 8 105 - -
Rops8g04082 739 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04082 Rops-Chr8 82641922 82645260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04082 1 517 MAP Kinase Kinase Kinase AT3G22420 55.965 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Rops8g04082 Pkinase 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04082 K08867 - gmx:100790554 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04082 8 82641922 82645260 Rops8g04082 8 82641922 82645260 ECH
Rops8g04082 8 82641922 82645260 Rops6g01773 6 35427991 35431392 PCT