Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g04080 | ATGGCGGACAAGGCAGTTACCATCCGAACTAGAAAGTTCATGACAAACAGGCTTCTTTCCAGAAAGCAATTCGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAGCTTAAGGAGAAGCTGGCAAGGATGTATGATGTGAAGGACCCAAACACTGTATTTGTCTTCAAATTCCGAACACATTTTGGAGGTGGCAAATCCACTGGTTTTGGTTTGATTTATGACACAGTTGAAAATGCGAAGAAGTATGAGCCCAAATACAGGCTAATCAGGAACGGTCTTGACACTAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCTTCTGATGCTGCCAAGGCTGGAAAAAAGAAATGA | 414 | 0.4324 | MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK* | 138 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g04080 | 137 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 6 | 108 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Rops8g04080 | 137 | Hamap | 30S ribosomal protein S24e [rps24e]. | 4 | 106 | IPR001976 | GO:0003735|GO:0005840|GO:0006412 | |
Rops8g04080 | 137 | Gene3D | - | 1 | 132 | - | - | |
Rops8g04080 | 137 | PANTHER | 40S RIBOSOMAL PROTEIN S24 | 1 | 131 | IPR001976 | GO:0003735|GO:0005840|GO:0006412 | |
Rops8g04080 | 137 | FunFam | 40S ribosomal protein S24 | 1 | 137 | - | - | |
Rops8g04080 | 137 | ProSitePatterns | Ribosomal protein S24e signature. | 66 | 88 | IPR018098 | - | |
Rops8g04080 | 137 | MobiDBLite | consensus disorder prediction | 102 | 137 | - | - | |
Rops8g04080 | 137 | Pfam | Ribosomal protein S24e | 25 | 103 | IPR001976 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g04080 | Rops-Chr8 | 82612662 | 82614415 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g04080 | 1 | 132 | Cytoplasmic Ribosomal Protein Gene Family | AT5G28060 | 87.879 | 2.87e-85 | 243 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g04080 | K02974 | - | gmx:100499852 | 243.432 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops8g04080 | 8 | 82612662 | 82614415 | Rops8g04080 | 8 | 82612662 | 82614415 | ECH | |
Rops8g04080 | 8 | 82612662 | 82614415 | Rops6g01775 | 6 | 35447880 | 35449751 | PCT |