Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04073 ATGGGACCCATGCAACGTCCTCCCAACCACCGCCACCACCCGTCCCCCGATTCTGGAATACACGGCGACTCCGTCCATCACGACGGCGTTCACCCTACAAGGAAGCCTAGGGAGGTGGGAGGGCTGGAGGAGCTGTTCCAAGCTTACGACATAAGATATTACATGACGGGGAAGGTAACAGAAAGATACTACACGACAGCGAAGGTAGCGGAGCTTGGTTTCACGGTGAGCACGTTGCTGGACATGAAGGACGAAGAGTTGGACGACATGATGAACAACCTCTCCCAGATTTTTCTTTGGGACCTCCTCATCGGTGAGTGTTACGACATCAAAGTCGCTATCAGAGCCGAACATCAACGCATCGACGAGGAAGACATGAAACGTCGTAACCTTCTCTCCACCGACACCACCACTAAAGCACTCGATGCCCTCTCTCAAGGTCGGAGGGTAAAAATGTAA 459 0.5294 MGPMQRPPNHRHHPSPDSGIHGDSVHHDGVHPTRKPREVGGLEELFQAYDIRYYMTGKVTERYYTTAKVAELGFTVSTLLDMKDEELDDMMNNLSQIFLWDLLIGECYDIKVAIRAEHQRIDEEDMKRRNLLSTDTTTKALDALSQGRRVKM* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04073 152 MobiDBLite consensus disorder prediction 1 37 - -
Rops8g04073 152 PANTHER PROTEIN LEAFY 25 146 IPR002910 GO:0003677|GO:0006355
Rops8g04073 152 MobiDBLite consensus disorder prediction 10 37 - -
Rops8g04073 152 Pfam Floricaula / Leafy protein SAM domain 62 125 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04073 Rops-Chr8 82544130 82544588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04073 39 146 Orphan Transcription Factor Family AT5G61850 52.586 3.94e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Rops8g04073 SAM_LFY 3.5e-29 CL0003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04073 - - gmx:100799720 154.451