Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04052 ATGGGATGTGTGATTAGCCGTGAAGCGAGGTCAGGGATAATCTCGAAGGAGAAGGGTTTGGGTGGTGAGAGTAACAAGAAGGTTGATGGAGTCTCGGAGAGCAAAGGTGAGGGAAAAGCGGTGGTAGAGGTTCAGAATGGTGGGAACAACGAGAAGGAGAAGGAGAAGGATGGTGGGGTCCAGAGAGAGCGGCCACATGGCGAAAGAAGAAGATCAAAGGGAAATCCAAGGCTAAGTAATCCACCCAAGCATTTGAGGGGGGAGAAGGTTGCAGCTGGGTGGCCACCATGGCTCACTGCAGTTTGTGGGGAAGCACTTAGTGGCTGGATTCCACGAAAGGCTGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACCTATAGTAATGTGTACAAAGCTAAAGACACTTTGACAGGCAAAATTGTTGCTCTAAAGAAGGTTAGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTCTGCGAAGGTTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACATCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTATATGGAACATGATTTGGCTGGACTTGCTGCAAGCCCAGGAGTCAGGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAACCGTCATGTACTTCACCGAGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGACTGGCATCTTTTTTTGATCCAAACCACAAGCATACCATGACTAGCCGTGTAGTAACCCTTTGGTATCGGCCTCCTGAGTTGCTTCTTGGAGCCACAGATTATGGTGTGGGCATAGACCTTTGGAGTGCCGGATGTATTTTAGGGGAGTTATTGGCTGGGAAGCCAATTATGCCTGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAACTGTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCTCGAGAACCATACAAGAGATGTATAAGAGAGATATTTAAAGATTTTCCACCTTCTGCTCTATCCCTTATGGATACTCTTCTTGCAATTGATCCTGTAGAACGGAAAACTGCCTCAGATGCTTTAAAAAGCGAGTTCTTTACCACAGAACCTTATGCTTGCGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAAGAAATGGATGCTAAACGACGGGATGATGAAATGAGGAGACAAAGGGCTGCAGGCAGATCCCAGGTTGATGGTCCGAAGAAGCATCGGACACGTGATCGTGCTGTGAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGTTACAATCCAATATTGATAGGAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGCTTTCCTTTAGGATCTTCACATCATATTGATCCAGATACTGTTCCTATCGATGTCTCTTTCACTTCAACCTCATATACCTATTCAAAAGAGCCATTCCAAGCTTGGTCAGGTCCCATTGGTAATGCTGCTGACATTGGAGTACAGAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGGTGCCCACAAGGATAAGGTTAAAGGAAAGAAAATCATAGCTTAG 1740 0.4425 MGCVISREARSGIISKEKGLGGESNKKVDGVSESKGEGKAVVEVQNGGNNEKEKEKDGGVQRERPHGERRRSKGNPRLSNPPKHLRGEKVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGVRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHKHTMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIREIFKDFPPSALSLMDTLLAIDPVERKTASDALKSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRQRAAGRSQVDGPKKHRTRDRAVKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPIDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVQKRKKHTAGDALDLSKPQKGAHKDKVKGKKIIA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04052 579 MobiDBLite consensus disorder prediction 545 567 - -
Rops8g04052 579 Pfam Protein kinase domain 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04052 579 SMART serkin_6 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04052 579 FunFam probable serine/threonine-protein kinase At1g54610 104 199 - -
Rops8g04052 579 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Rops8g04052 579 SUPERFAMILY Protein kinase-like (PK-like) 112 408 IPR011009 -
Rops8g04052 579 MobiDBLite consensus disorder prediction 1 89 - -
Rops8g04052 579 MobiDBLite consensus disorder prediction 409 451 - -
Rops8g04052 579 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Rops8g04052 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Rops8g04052 579 ProSiteProfiles Protein kinase domain profile. 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04052 579 Gene3D Transferase(Phosphotransferase) domain 1 200 441 - -
Rops8g04052 579 MobiDBLite consensus disorder prediction 20 36 - -
Rops8g04052 579 FunFam probable serine/threonine-protein kinase At1g54610 200 441 - -
Rops8g04052 579 MobiDBLite consensus disorder prediction 545 579 - -
Rops8g04052 579 PANTHER CELL DIVISION PROTEIN KINASE 115 405 - -
Rops8g04052 579 MobiDBLite consensus disorder prediction 419 451 - -
Rops8g04052 579 MobiDBLite consensus disorder prediction 48 75 - -
Rops8g04052 579 CDD STKc_CDK9_like 117 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04052 Rops-Chr8 82129088 82134343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04052 109 451 Core Cell Cycle Gene Families AT5G10270 51.944 3.45e-124 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops8g04052 Pkinase 2.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04052 K08819 - gmx:100786837 1032.32