Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04050 ATGGGCGCGCCAAAGAAAAGTGCTGCTAGGGTTTCAGAAGACCCCGACGAAATTGTTCGAGTTCCATTGCAAGCCATTCTCTTAGCCGATAGTTTTACCACAAAGTTCAGACCAATCACGCTCGAACGCCCTAAAGTGCTGTTGCCACTAGTGAATGTTCCAATGATAAATTACACTTTGACCTGGCTTGAATCCGCTGGTGTCGAAGAGGTTTTTGTTTTCTGCTGTGCTCATTCCAAGCAGGTGATTAACTATTTGGAGAAATCTGAGTGGTTATCTCAACCAAATTTTACTGTAACAACTGTAGAGGCACAGGATTCTGTGAGCGCCGGAGATGCTCTGCGTGTCATATATGAGCGCAACGTGATACATGGAGATTTTGTCCTTATCAGTGGAGATACTGTAAGCAACATGTCGCTTACTCAGGCGCTTCTAGAACATAAAGAAAGGAGGAAGAAAGATAGTAATGCTGTCATGACCATGGTCATCAAACGGTCAAAATCTAATGCAGCTATCCATCAGTCTCGACTTGGTACTGATGAACTTTTCATGGCCACTGATCCTAATACCAAACAACTTTTGTATTATGAGGATAAGGCAGACAATTCGAAAGGCACTCTACATCTTGACAAGTCATTGCATGTCAATTATCCTTCCCTCTCTCTACACCATGACAAGCAGGATTGTTACATTGACATCTGCTCGCCGGAAGTCCTTAGCCTATTTGAAGACAATTTTGACTACCAACATCTACGGCGTGATTTTGTCAAGGGATTGCTGGATGATAATATAATGGGGTACAAAATTTTTGTTCATGAAATCCACTCAAACTACGCTGCAAGGATTGATAACTTCCGAAGCTATGACACTGTCAGCAAGGATATAATTCATAGATGGACATATCCATTGGTACCAGATGTGATGAATTTTGGGAACACAACTACTAGGCTTGAACGACAATTAATGTATCGTGCTTCAGAAATATCACAATCACAGTCTGCTTTTATTGGCCCATGCACTGTTATAGGATCTGGCACCAAAATTGGGAATAACACTAAAATTTCAAATTCTGTTATTGGAGAAGGATGTAAAATTGGGTCAAATGTGCACATAGAGGGATGCTATATATGGGACAACATCACCATAGAAGATGGCTGTAAACTTAGACATGCAATTGTATGTGATGGGGTGACTATGAAGTCAGGAGCTGTTCTGGAACCTGGTATTGTTTTATCTTTCAAGGTTGTAGTTGGGCAGGAGTTTGTCGTTCCTCCTTATTCGAAAGTATCTCTATTACAGCAGCCAATTCAGGAAGATAGTGATGAGGAGCTTGAATATGCTGACAGTTCTAGTGTCATCACTAGCACAGTGGATAAGTCAGATGTAGAGATTGCTTCCCAAGCATTGGAGACACATTTTAACCCTGCTACAGAGCTAGGTGTGGGTGGGGTTGGTTATATTTGGTCAAAATGTGAAGGAGGCCATGAAGAAGAGTGGAGGCATTCAGTGGCACCTATTCCTGTAGATAAAATTTTAGAGGCAATGAAAGTTATGGAAGATGATCTGGAGTTAACTCATGATGGCAGTATTCTCCCACCTTCTGGGGAGCTGAAACCTAATGATTCAGATGATGATGATCATGATGATTCCAGAGATGACTCTGATTACTTTGAGAAAGAGGTTGAAGCAACTTTCCTCAGGGCTGTGCATGAAAATATACAAGAAAGCCATTTGATATTAGAAATCAACTCTTTGAAGTTGTCATACAATAAGCTAACTGCTGATTGTGCTGGAGCTTTATTTTATGCTATGATGAAGCATGCTTTAGACATGCCCCATAATTCAGCTGATAGCTTGATTCAGAATGTTCAGGTTGTACTTGGAAAATGGAAGAAGGTTCTTACATCATATCTGATTGATATGGATGAACAGATTGAAGTAATCCTAAAATTTGAAGAAATGTGTTTGGAATCTGCTAAGGAGTTTGCTCCATTGTTCACAAAGATTTTGCACTACATGTATAATGAAGATATTGTAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAGAAAGATGCAGATGAGTCAGATAAAGTTTTTGTTAAACAGGCCCAAAAATTAATTCATTGGCTAAAAGAGGCACCTGAAGAAGACGATGACGAGGAAGAATAG 2175 0.4018 MGAPKKSAARVSEDPDEIVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCAHSKQVINYLEKSEWLSQPNFTVTTVEAQDSVSAGDALRVIYERNVIHGDFVLISGDTVSNMSLTQALLEHKERRKKDSNAVMTMVIKRSKSNAAIHQSRLGTDELFMATDPNTKQLLYYEDKADNSKGTLHLDKSLHVNYPSLSLHHDKQDCYIDICSPEVLSLFEDNFDYQHLRRDFVKGLLDDNIMGYKIFVHEIHSNYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGNTTTRLERQLMYRASEISQSQSAFIGPCTVIGSGTKIGNNTKISNSVIGEGCKIGSNVHIEGCYIWDNITIEDGCKLRHAIVCDGVTMKSGAVLEPGIVLSFKVVVGQEFVVPPYSKVSLLQQPIQEDSDEELEYADSSSVITSTVDKSDVEIASQALETHFNPATELGVGGVGYIWSKCEGGHEEEWRHSVAPIPVDKILEAMKVMEDDLELTHDGSILPPSGELKPNDSDDDDHDDSRDDSDYFEKEVEATFLRAVHENIQESHLILEINSLKLSYNKLTADCAGALFYAMMKHALDMPHNSADSLIQNVQVVLGKWKKVLTSYLIDMDEQIEVILKFEEMCLESAKEFAPLFTKILHYMYNEDIVEEDAILSWEDEKKDADESDKVFVKQAQKLIHWLKEAPEEDDDEEE* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04050 724 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Rops8g04050 724 Gene3D Hexapeptide repeat proteins 311 433 - -
Rops8g04050 724 MobiDBLite consensus disorder prediction 525 554 - -
Rops8g04050 724 ProSiteProfiles W2 domain profile. 551 722 IPR003307 GO:0005515
Rops8g04050 724 SUPERFAMILY ARM repeat 557 715 IPR016024 -
Rops8g04050 724 Pfam eIF4-gamma/eIF5/eIF2-epsilon 643 722 IPR003307 GO:0005515
Rops8g04050 724 FunFam Translation initiation factor eIF-2B epsilon subunit 547 723 - -
Rops8g04050 724 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Rops8g04050 724 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 369 IPR029044 -
Rops8g04050 724 CDD W2_eIF2B_epsilon 557 715 IPR044123 GO:0005085|GO:0031369
Rops8g04050 724 Gene3D - 544 723 - -
Rops8g04050 724 SUPERFAMILY Trimeric LpxA-like enzymes 268 429 IPR011004 -
Rops8g04050 724 Pfam Nucleotidyl transferase 25 164 IPR005835 GO:0009058
Rops8g04050 724 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 8 723 - -
Rops8g04050 724 SMART 542_3 631 718 IPR003307 GO:0005515
Rops8g04050 724 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 14 303 IPR029044 -
Rops8g04050 724 CDD LbH_eIF2B_epsilon 341 419 - -
Rops8g04050 724 FunFam Trimeric LpxA-like enzyme 316 449 - -
Rops8g04050 724 FunFam Translation initiation factor eIF-2B subunit epsilon 12 303 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04050 1 715 Eukaryotic Initiation Factors Gene Family AT2G34970 63.485 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04050 K03240 - gmx:100784894 1228.77