Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04030 ATGGACAATGCTTTTGATGATAAACACAGAGAAGGAGGCTTTTTGTTTTCTAGCCCTGCTTCTGCCCAAGACTTGAGGAATTTTGATTTGGAGAAAGAGGAAGGAGATGCCTCACCTCCAGGAGTAGTCTTAAAAGACTACCTTAGAGGCTTTGACGATCATCAATCATCTCAATTGGTTACCAGTTGTTCAAGCTTAAGGGCACAGTTTCACTGGAGCAAGTGTTTAAAACTATGGAACAGAAGATCAATTAAGCACCAAGCATCCTTCCCTCCTTGTTGTGTGCCAAACTTAACAAAATCTAAAAGCAAAAGCGTTAAAGAAAATCCTGCTCTATGCAATCTATATAACTTCAGATCTTCTTTGGTGAATTTCAGCCTCTCTGACCTGAGAAATGCAACCAACAGTTTTAGCAATGAAAATTTAATTGGAAGAGGTGGCTATGCTGAGGTTTATAAGGGTCGCCTCCAAGATGGGCAACTAATAGCAGTTAAGAGACTGAATAAAGGGAATAAAGATGACAGGACATCAAGCTTTCTGTCTGAGCTAGGCATTATTGCTCATGTTAACCATCCTAATGCTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGGAATGCACCTTGTCTTTGAACTATCTCCACTGGGAAGTTTAGAATCTCTTCTTCATGGTTCAAATAAAAACAAATTAGATTGGAGTAAAAGGAATAAAATTGCCGTGGGGATTGCCGATGGCCTCCTCTATCTTCATGAGAATTGTCAAAGGCGGATAATTCATAGAGATATTAAAGCAGAGAATATTCTTCTCTCAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATGTACTCACCATAGTGTAACAAAATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTTAATGCATGGCATAGTAGATGAGAAAACTGATGTTTATTCCTTTGGGGTCCTACTTTTGGAGATCATAACTGGGCGCCGGGCTTTGGATCATTTGCACCAAAGTGTTGTGTTATGGGCAAAGCCTTTGCTTTACGCTAATAATATTAAGGAGTTGGTTGATCCTTGTCTTGGTGATGATTATGACCGAGAACAGATGGATCGTATTGTTTTGACTGCATCTCTCTGTGTTGAGAAATCTCCCATCTTACGCCCCCGCATGAGTCAGGCAATTAGCAGAATTAAAAAAAATAATGCTGGATGGCTCAATACAGTTAGTAATGCCACATCTTCTGCAGCAGGAAAAGTCTCCATTCCATCTGGTGCTGTTTCTGCTGTCTTACACTGCTCCATGCCCCATGATGCCCACAATGTAATATCTAAAATTCATGCTCTGGAGCACTTATTGGTTTATACCCCTTCTGGTCATTTAATTCAATATAAACCACTACCGTCGTTGGGGGCAGAGCCTTGTGAAACTGTTCCAAGAATGGACCCGGTTCCTTCCGCACAGATACAAGAAGAGGATTTGCAAGTGAAAGTTGAACCTGTTCAATGGTGGGATGTCTGTAGGAGATATGATTGGCCAGAAAGAGAGGTATCTTTCTTTATGATGAGTCCTTTGGAGGCCAAGGTTATGAATTTATGTGAATTCGGTACCGACGGAGAGATTGAAATTGAGAATATTCCTATTAATGAGGTTGAAATAAGACAAAAGGATTTGTTGCAAATCGTTAACCATTTCCATGGAATTCAGTCTACATGGCTTGACAGAGGTATTGTTATGGGAAGATGCTCTACCTCTTCTTCTGATTCCCAAGGAGCTGAAGATAAGTTGTCAGAAGATGCTGTGATTTCCCATTCAAAGTTGATGATACCTGGTCCGGCTCTGAAGGAAAATGTTGGCATGTCATCATATTTTTCTTCATCAATTGACTTGTCTGGAAATGAGATTAATGGCAAAAACAGAGAGGAAGCTGTGTTGGAATCACCTCTTTCAAAAATGGAAGTTAACATGGATGATGTATCAACAGGTGCTTCACATTTTGCTGATAGTGTAACTAAAGTTAAATCATCAAAAGATAGCAAAGCCAGTGATGCAGAGGTTGTTACTGATGTGGATTGTAGCAGTCCCTGTGGCAGGGAGAAATCTGAGGAAGATGATGTCGATGATGACATGTTTGGTGGTGTATTTGACTTATCTGAGGAAGGTTGA 2181 0.4035 MDNAFDDKHREGGFLFSSPASAQDLRNFDLEKEEGDASPPGVVLKDYLRGFDDHQSSQLVTSCSSLRAQFHWSKCLKLWNRRSIKHQASFPPCCVPNLTKSKSKSVKENPALCNLYNFRSSLVNFSLSDLRNATNSFSNENLIGRGGYAEVYKGRLQDGQLIAVKRLNKGNKDDRTSSFLSELGIIAHVNHPNAAKLIGCGVEGGMHLVFELSPLGSLESLLHGSNKNKLDWSKRNKIAVGIADGLLYLHENCQRRIIHRDIKAENILLSENFEPQICDFGLAKWLPEQCTHHSVTKFEGTFGYFAPEYLMHGIVDEKTDVYSFGVLLLEIITGRRALDHLHQSVVLWAKPLLYANNIKELVDPCLGDDYDREQMDRIVLTASLCVEKSPILRPRMSQAISRIKKNNAGWLNTVSNATSSAAGKVSIPSGAVSAVLHCSMPHDAHNVISKIHALEHLLVYTPSGHLIQYKPLPSLGAEPCETVPRMDPVPSAQIQEEDLQVKVEPVQWWDVCRRYDWPEREVSFFMMSPLEAKVMNLCEFGTDGEIEIENIPINEVEIRQKDLLQIVNHFHGIQSTWLDRGIVMGRCSTSSSDSQGAEDKLSEDAVISHSKLMIPGPALKENVGMSSYFSSSIDLSGNEINGKNREEAVLESPLSKMEVNMDDVSTGASHFADSVTKVKSSKDSKASDAEVVTDVDCSSPCGREKSEEDDVDDDMFGGVFDLSEEG* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04030 726 ProSiteProfiles Protein kinase domain profile. 137 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04030 726 SMART serkin_6 137 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g04030 726 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Rops8g04030 726 Gene3D Phosphorylase Kinase; domain 1 97 211 - -
Rops8g04030 726 MobiDBLite consensus disorder prediction 674 726 - -
Rops8g04030 726 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 214 417 - -
Rops8g04030 726 Pfam Breast carcinoma amplified sequence 3 398 521 IPR022175 -
Rops8g04030 726 SUPERFAMILY Protein kinase-like (PK-like) 119 402 IPR011009 -
Rops8g04030 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Rops8g04030 726 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 113 212 - -
Rops8g04030 726 Pfam Protein tyrosine and serine/threonine kinase 140 348 IPR001245 GO:0004672|GO:0006468
Rops8g04030 726 MobiDBLite consensus disorder prediction 676 690 - -
Rops8g04030 726 PANTHER OS08G0249100 PROTEIN 60 408 IPR046958 -
Rops8g04030 726 Gene3D Transferase(Phosphotransferase) domain 1 214 420 - -
Rops8g04030 726 MobiDBLite consensus disorder prediction 707 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04030 Rops-Chr8 81858529 81864532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04030 122 404 Receptor kinase-like Gene Family AT1G53420 44.863 6.83e-70 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops8g04030 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04030 - - gmx:113001177 586.645