Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g04013 ATGGCACTAGAAGCAGTAGTATATCCACAACCACAAGACCCATTTGGTTTTGGAATCAAAGACCTCTGCAACTACAATTACAACTTGTTAGAAGATGAAGGAGGCTACTGGAACCTCAATCTTGAAAATGAAGAACAAGTTTCTATCAGTTTTCTTGAGAACCAAACAGAGAATTATCCTTATGGAGCATCATTGTTGCCACACATGAATGAAGTGCATGTCCCTAATCCATCTTCAGAGGCAAGCAACAACCAGAACTTAGATAGCTCAACTTCAACTCCTAATCGTCCTAAAAGGCGCAGAGCCAAAAGCAGAAAGAATAAGGAAGAAATTGAGAATCAGAGAATGACTCACATTGCTGTAGAGCGAAACAGAAGGAAGCAAATGAATGAGTATCTCTCTGTTCTTCGGTCTCTGATGCCTGAATCTTATGTCCAAAGGGGTGATCAAGCATCTATAATTGGAGGTGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAAAAAGAGGGGAAATCTGATACTGTTACAGATGCAAATATGCCATTTTCTGAGTTCTTCACTTTTCCACAGTACTCAACAAGTGCTAGTGGCTGTGATAATTCTGCAGCCATGGGTGAGCAAGTGGGAGAGGTTCAACCTGGCATTGCTGACATTGAAGTGACAATGGTGGAGAGCCATGCAAATATCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATGGTCTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTCACTACCACTGGGGAAATTGTCATCTATTGTCTCAGTGTTAAGGTGGAGGATGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGATGGATAAGATTCAACAAGAGTCAATATTGAATTAA 942 0.413 MALEAVVYPQPQDPFGFGIKDLCNYNYNLLEDEGGYWNLNLENEEQVSISFLENQTENYPYGASLLPHMNEVHVPNPSSEASNNQNLDSSTSTPNRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKSDTVTDANMPFSEFFTFPQYSTSASGCDNSAAMGEQVGEVQPGIADIEVTMVESHANIKIRSKKRPKQLLKMVSSLHGMRLTILHLNVTTTGEIVIYCLSVKVEDDCKLGSVDEIAAAVYQMMDKIQQESILN* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g04013 313 Pfam Helix-loop-helix DNA-binding domain 114 165 IPR011598 GO:0046983
Rops8g04013 313 CDD bHLH_AtFAMA_like 116 188 - -
Rops8g04013 313 SMART finulus 119 170 IPR011598 GO:0046983
Rops8g04013 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 176 IPR036638 GO:0046983
Rops8g04013 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 164 IPR011598 GO:0046983
Rops8g04013 313 MobiDBLite consensus disorder prediction 75 93 - -
Rops8g04013 313 Coils Coil 161 181 - -
Rops8g04013 313 PANTHER MAX DIMERIZATION, MAD 55 309 - -
Rops8g04013 313 MobiDBLite consensus disorder prediction 70 111 - -
Rops8g04013 313 Gene3D - 98 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g04013 Rops-Chr8 81593144 81594755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g04013 1 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.582 2.48e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g04013 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g04013 - - gmx:100782243 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04013 8 81593144 81594755 Rops8g04013 8 81593144 81594755 ECH
Rops8g04013 8 81593144 81594755 Rops6g01821 6 35889112 35890697 PCT